User: rossi

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rossi0
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Posts by rossi

<prev • 4 results • page 1 of 1 • next >
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Comment: C: cuffdiff & cummerbund
... Even more oddly enough, a couple of tools, called "Extract_CuffDiff" and "Plot_CuffDiff" are advertised in the Galaxy Videos (see "NGS101-16 RNA-Seq: Playing with CuffDiff output and Cummerbund to find differentially expressed transcripts" here https://vimeo.com/128265982) but are implemented in the ...
written 3.1 years ago by rossi0
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Comment: C: where can I get Info files for CummeRbund from Galaxy cuffdiff?
... Hi, I have a similar problem. I'm too using the Galaxy Main Public server (usegalaxy.org) and cuffdiff outputs tried to generate a CummeRbund SQLite db (where in the previous Galaxy's release all the CummeRbund files were obtained as the Cuffdiff output). I receive an error and the SQLite db is not ...
written 3.1 years ago by rossi0
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Comment: C: Extract-Cuffdiff & Plot-Cuffdiff tools missing in NGS:RNAseq
... Addendum: looking more closely I don't even find any "NGS:RNA analysis" group in the tools menu, as shown in the video (https://vimeo.com/128265982). In the GalaxyMain instance I'm using right now I see a "NGS:RNAseq" group. Watching again the video I realized that the instance used there is the "t ...
written 3.1 years ago by rossi0
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Extract-Cuffdiff & Plot-Cuffdiff tools missing in NGS:RNAseq
... Hi, I was testing the new Cuffdiff implementation in Galaxy and I produced a Cuffdiff output in the form of "cummeRbund SQLite db". To proceed in the analysis, at least according to your NGS101 video tutorial (#16) I should find the Extract-Cuffdiff and Plot-Cuffdiff tools under the NGS:RNA analysi ...
cufflinks galaxy rna-seq written 3.1 years ago by rossi0

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