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Posts by DL
... Hello, Can anyone tell me that how can i get information of aligned reads using reads name from bam file. I want to extract some specific IDs (stored in a file) from bam file. I found that samtools is solution using samtools view file.bam | fgrep -w -f IDs.txt. This command takes lot of time. Can ...
... hello, Recently i got paired end data and firstly, i removed the adopter sequences. For that i used fastx_clipper but i got the number of reads are different in R1 and R2. So i searched the solution for that on biostars and i found that ppl first merging the R1 and R2 files then do filtering for re ...
... I need to use the tool "NGS:SOAPdenovo" in GigaGalaxy when I upload my data in GigaGalaxy then it take so much time still unfinished. So please tell me that how to upload my data in it. ...
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