User: DL

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DL0
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3 years, 12 months ago
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Posts by DL

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Regarding reads extract from bam file
... Hello, Can anyone tell me that how can i get information of aligned reads using reads name from bam file. I want to extract some specific IDs (stored in a file) from bam file. I found that samtools is solution using samtools view file.bam | fgrep -w -f IDs.txt. This command takes lot of time. Can ...
bamfile bam galaxy mapping samtools written 8 weeks ago by DL0 • updated 8 weeks ago by Jennifer Hillman Jackson25k
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Regarding splitter or merging the paired end sequencing file
... hello, Recently i got paired end data and firstly, i removed the adopter sequences. For that i used fastx_clipper but i got the number of reads are different in R1 and R2. So i searched the solution for that on biostars and i found that ppl first merging the R1 and R2 files then do filtering for re ...
assembly galaxy rna-seq written 15 months ago by DL0 • updated 15 months ago by y.hoogstrate460
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how can i upload my data in GigaGalaxy for assembly
... I need to use the tool "NGS:SOAPdenovo" in GigaGalaxy when I upload my data in GigaGalaxy then it take so much time still unfinished. So please tell me that how to upload my data in it. ...
galaxy data gigagalaxy upload written 3.7 years ago by DL0 • updated 8 weeks ago by Jennifer Hillman Jackson25k

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