User: viviane.laine

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France
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3 years, 7 months ago
Joined:
3 years, 12 months ago
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v************@univ-lyon1.fr

Posts by viviane.laine

<prev • 6 results • page 1 of 1 • next >
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Answer: A: Issue with Unified Genotyper
... Thank you very much, it's now working! I run the tool independently with each setting (SNP or INDEL) and then I combine the files. It's two more steps but, well, it's working! Thank you for your help, Viviane ...
written 3.7 years ago by viviane.laine0
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Answer: A: Issue with Unified Genotyper
... Hi Wolfgang, Thanks for your answer, but unfortunately, I'm using Windows machine, and I'm not familiar with command line tools. As far as Unified Genotyper is concerned, it seems the tool is not working, indepentently from the Cloudmap workflow: I tried to make the tool run but it stops with the ...
written 3.7 years ago by viviane.laine0
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Issue with Unified Genotyper
... Hi, I get an issue while running the workflow "Cloudmap: Unmapped mutant Worflow_3-6-2014". The workflow stops at the step "Unified Genotyper". I've tried to rerun it several times, but it still doesn't work while several weeks ago it was working correctly. I'm using default settings and I got the ...
cloudmap unifiedgenotyper gatk written 3.7 years ago by viviane.laine0
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Filtering for the frequency of ALT alleles
... Hi, When running CloudMap unmapped mutant workflow, I get a SnpEff file with Homozygous or heterozygous status for each called variant. However I would like to have the ratio of alternate non-reference alleles / total number of alleles, to set up the threshold as I would like. Then: -Would it be p ...
vcf filter snpeff written 3.9 years ago by viviane.laine0 • updated 3.9 years ago by Jennifer Hillman Jackson25k
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Comment: A: can't upload files - Internal Server Error
... It's working now! Thanks! ...
written 4.0 years ago by viviane.laine0
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can't upload files - Internal Server Error
... Hi, I've got a problem since a few days when trying to upload data: the following error message appears, and reloading the page does not work. I can not have access to the uploading page... Does anyone know how to fix it? Thanks,     #Error message# Internal Server Error Galaxy was unable to ...
galaxy software error written 4.0 years ago by viviane.laine0 • updated 2.2 years ago by anamikalibra880

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