User: David Coil

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David Coil20
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Posts by David Coil

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Sra Files On Galaxy
... Greetings Galaxy team, Are there any plans for Galaxy to be able to deal with SRA files? NCBI no longer produces fastq dumps of data, everything is now maintained in SRA format. This means that in order to use the data on Galaxy, one must download the SRA, convert it to fastq and then upload this ...
galaxy written 7.8 years ago by David Coil20
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Comment: C: Tophat Etc
... I actually have a very basic question on the topic of Cufflinks since I'm a bioinformatics neophyte... I have performed a BWA alignment of Illumina RNA-seq data to the appropriate annotated cDNA database... so it's currently in SAM format. Can I get this data in a form that can be processed by Cuf ...
written 7.9 years ago by David Coil20

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