User: Guilherme Dias

gravatar for Guilherme Dias
Reputation:
110
Status:
Trusted
Location:
Brazil
Last seen:
2 years, 4 months ago
Joined:
4 years, 1 month ago
Email:
g*************@live.com

Ph.D. student in Genetics. I'm here because I thought Galaxy could be a non-traumatic way to step into bioinformatics while also attending the wet lab. It is much better than I thought. o/

Posts by Guilherme Dias

<prev • 21 results • page 1 of 3 • next >
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Error with Lastz mapping
... Hello mates, I've been hiting upon this error over the last days (bellow)... I frequently use the Lastz tool and have even used it with this very same dataset a while ago. Is there something wrong with the server?   python: can't open file '/galaxy/main/migrated_tools/toolshed.g2.bx.psu.edu/repo ...
software error lastz written 2.6 years ago by Guilherme Dias110 • updated 2.6 years ago by kara.powder0
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Galaxy won't start in Biolinux
... Hello folks, I've recently installed the newest version of Biolinux (8) in my HD. Everything seems to be working well, but when I try to open Galaxy (by double-clicking the icon or sudo start galaxy) the following message appears: "The Galaxy server doesn't seem to be running on your machine." Ho ...
biolinux galaxy software error local instance written 2.9 years ago by Guilherme Dias110 • updated 2.9 years ago by Jennifer Hillman Jackson25k
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EBI-SRA upload result in blank page
... Hey guys I'm having trouble in accessing EBI-SRA. Whenever I click on "get data > EBI SRA" the page just blanks. Is this just me or someone else is encountering the same problem? Thanks ...
ebi sra upload software error written 3.0 years ago by Guilherme Dias110 • updated 3.0 years ago by Jennifer Hillman Jackson25k
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Comment: C: Retrieving nBLAST similarity hits and flanking regions.
... Hey Jen, this would be a nice option. Nevertheless, the RM server seems to mask all repeats available in the Repbase library. So, what if I just want to mask this specific repeat I'm studying? ...
written 3.5 years ago by Guilherme Dias110
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Retrieving nBLAST similarity hits and flanking regions.
... Hey guys, I need to retrieve some non-annotated repetitive elements from an assembled genome plus their flanking regions (through nBLAST). Is there a tool on Galaxy that could help me do that at a faster pace? Thanks ...
blast written 3.5 years ago by Guilherme Dias110 • updated 3.5 years ago by Jennifer Hillman Jackson25k
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Comment: C: Link files from another disk to my local Galaxy instance
... Hey Jen, I'm not sure if i'm following what you said. The directory contains only two files (paired-end reads R1 and R2). So I just typed the path to each of the files: /media/mcclintock/Banco de dados/Guilherme/Data/Intensities/BaseCalls/Dseriema_S1_L001_R1_001.fastq /media/mcclintock/Banco de d ...
written 3.6 years ago by Guilherme Dias110
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Link files from another disk to my local Galaxy instance
... I was trying to use the tool "Upload files from filesystem paths" to link some .fastq files to my local Galaxy installation. These fastq files were in a different disk from the Galaxy installation and, although using the complete path to the files, I kept getting the error: "invalid paths". Once I ...
filesystem path link upload written 3.6 years ago by Guilherme Dias110 • updated 3.0 years ago by juls.jaeger10
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Comment: C: History doesn't appear in the Chrome browser
... Hello Guilherme Dias! We believe that this post is does not fit the main topic of this site. problem solved For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with. If you disagree please tell us why in a reply below, ...
written 4.1 years ago by Guilherme Dias110
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Comment: C: History doesn't appear in the Chrome browser
... Actually I was seeing this on usegalaxy.org. I just restarted the computer (after a power outage =s) and now the history is back again... weird indeed. thanks ...
written 4.1 years ago by Guilherme Dias110
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Comment: C: Admin privileges on local Galaxy
... Thanks Dannon. PS: should I delete this question? ...
written 4.1 years ago by Guilherme Dias110

Latest awards to Guilherme Dias

Autobiographer 4.1 years ago, has more than 80 characters in the information field of the user's profile.
Appreciated 4.1 years ago, created a post with more than 5 votes. For A: Queue to run
Scholar 4.1 years ago, created an answer that has been accepted. For A: Queue to run
Teacher 4.1 years ago, created an answer with at least 3 up-votes. For A: Queue to run

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