User: jasperkoehorst

Reputation:
10
Status:
New User
Location:
Netherlands
Last seen:
1 year ago
Joined:
4 years ago
Email:
j*************@gmail.com

Posts by jasperkoehorst

<prev • 16 results • page 1 of 2 • next >
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Galaxy production server virtualenv
... > I might have found a solution: https://github.com/galaxyproject/galaxy-hub/pull/309 I am trying to set up galaxy according to the production server page: https://galaxyproject.org/admin/config/performance/production-server/ It immeadiatly goes wrong at the second step: nate@weyerbacher% wg ...
galaxy production written 12 months ago by jasperkoehorst10 • updated 12 months ago by Jennifer Hillman Jackson25k
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Comment: C: GFF / Fasta into Trackster
... The current gff file is only 26 lines but ill try a single gene ...
written 18 months ago by jasperkoehorst10
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Comment: C: GFF / Fasta into Trackster
... It is indeed a fasta file of ±7kb its an example operon ...
written 18 months ago by jasperkoehorst10
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GFF / Fasta into Trackster
... Hello, I am trying to create a small teaching environment and I was hesitating to use either IGV or Galaxy and as I am planning to use galaxy for other steps as well it would be a nice combination. When loading the fasta file obtained from: https://www.ncbi.nlm.nih.gov/nuccore/J01636 it seems to w ...
trackster gff written 18 months ago by jasperkoehorst10
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Network visualisation of json or gml networkx
... I have created a module which creates a GML file to show the network of the dataset. Now I noticed the visualisation button but unfortunately GML is not (properly) supported. Using the more info button I arrived at this page: https://github.com/eteriSokhoyan/GraphVis I tried the provided json fil ...
json visualization gml graph written 2.2 years ago by jasperkoehorst10 • updated 2.2 years ago by carlfeberhard390
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images for help section
... I am currently developing some tools which can be used either inside or outside galaxy and therefor are not hosted in the galaxy toolshed yet. Now I am working on the help section for the galaxy wrapper and wanted to include images as it says more than a thousand words. However according to the manu ...
help tool written 2.2 years ago by jasperkoehorst10 • updated 2.2 years ago by Peter van Heusden150
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Comment: C: Galaxy tar.gz upload and download
... And also I prefer that galaxy is not unzipping or touching the files at all unless I tell them to, or tell them not to.. ...
written 3.5 years ago by jasperkoehorst10
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Single and Multi threading on one machine
... I am trying to set up galaxy tools either single or multithreaded on a 24 core machine. So what I would like to achieve is to have a maximum of 20 single core workers running and if a multi threaded job is started of lets say 6 cores then I can have a maximum of 20-6 = 14 single core runners and 1 ...
multi threading written 3.5 years ago by jasperkoehorst10 • updated 3.5 years ago by jmchilton1.1k
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Comment: C: Galaxy tar.gz upload and download
... that is the shock, after uploading and untarring by galaxy, when downloading that exact same history file the content is less, some folders and files from the tar are missing… This baffles me a lot as I am unsure why this could happen. ...
written 3.5 years ago by jasperkoehorst10
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Galaxy tar.gz upload and download
... When uploading a tar.gz file I noticed a file difference and this was explainable by the fact that it turned tar.gz. into a tar file. When downloading this tar file from galaxy I noticed after extraction that half of my files were gone..... How to reproduce this? Upload a tar.gz file, and save it ...
tar.gz written 3.5 years ago by jasperkoehorst10

Latest awards to jasperkoehorst

Popular Question 18 months ago, created a question with more than 1,000 views. For Single and Multi threading on one machine
Popular Question 18 months ago, created a question with more than 1,000 views. For Galaxy PBS system
Popular Question 18 months ago, created a question with more than 1,000 views. For Galaxy tar.gz upload and download

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