User: puneetd

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puneetd10
Reputation:
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New User
Location:
United States
Last seen:
2 years, 8 months ago
Joined:
3 years, 3 months ago
Email:
p******@upenn.edu

Posts by puneetd

<prev • 4 results • page 1 of 1 • next >
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Answer: A: Cufflinks output file with many 0 FPKM values
... Thanks Jen. That is a very helpful post. I am looking into the mappings and the source annotation files carefully to figure out where exactly the problem is.  ...
written 3.2 years ago by puneetd10
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Cufflinks output file with many 0 FPKM values
... Hi, I have run Cufflinks on my zebrafish RNAseq reads mapped using Tophat2. The Cufflinks output file has several issues that I cannot seem to resolve: 1. Many genes are identified by CUFF IDs instead of gene IDs. 2. Many genes have FPKM values of 0 despite showing numerous alignments in UCSC bro ...
cufflinks zebrafish rna-seq written 3.2 years ago by puneetd10
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Answer: A: Tophat jobs not running
... Thanks for your reply. I should expect my job to start by tomorrow morning then.   ...
written 3.3 years ago by puneetd10
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Tophat jobs not running
... Hi, My tophat jobs are taking a long time to run. I had set up one last night which didn't run. This morning I set up two new jobs and deleted the first one but still nothing is happening. What is the normal waiting time for for a job to begin? Thanks. Puneet ...
jobs tophat queue written 3.3 years ago by puneetd10 • updated 3.3 years ago by Jennifer Hillman Jackson23k

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