User: morgane.moreau.info

Reputation:
30
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New User
Location:
Australia
Last seen:
3 years, 3 months ago
Joined:
3 years, 4 months ago
Email:
m******************@gmail.com

Posts by morgane.moreau.info

<prev • 19 results • page 1 of 2 • next >
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Comment: C: Uploading small files are queued for hours
... Hi Nate,  It happened again ealier today so I sent this info to the address you gave me. It just happened again at 2.12 pm if you want to ave a look.  ...
written 3.3 years ago by morgane.moreau.info30
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Comment: C: Uploading small files are queued for hours
... Thanks for this advises and providing alternatives :) The Stampede test/development works fast. The normal one gets queued as well. Is the test one ok to use?  ...
written 3.3 years ago by morgane.moreau.info30
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Comment: C: Uploading small files are queued for hours
... When I use the FTP upload (old school way) once I click on execute, the middle window (where is normally displays  job has been successfully added to the queue) in between the Galaxy tools window on the left and the history window on the right, had a smiley face down :( and underneath it's written s ...
written 3.3 years ago by morgane.moreau.info30
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Comment: C: Pileup error: line length exceeds XXX in sequence YYY
... No it didn't work, stayed queued (gray for ever).  ...
written 3.3 years ago by morgane.moreau.info30
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Comment: C: Uploading small files are queued for hours
... Same as me... I start to  wonder if there is not a problem with galaxy, maybe due to the maintenance planned on the week end ?? I don't know... I've been playing with Galaxy for about two weeks and now I want to redo the same things in a new (clean) workflow to be able to extract it and nothing work ...
written 3.3 years ago by morgane.moreau.info30
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Comment: C: Uploading small files are queued for hours
... Thanks Nate. I tried to use the new upload functionality but it returned the same error. (server closed...).    ...
written 3.3 years ago by morgane.moreau.info30
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Comment: A: Uploading small files are queued for hours
... Thanks for your feedback ! Jen, yes I'm using the public main galaxy. Most of the time it doesn't work. I'm starting to think that there is a lag between upload to the server and being able to upload it into a history.  I will give a try with WinSCP if I run out of patience :). Thanks Guilherme.  ...
written 3.3 years ago by morgane.moreau.info30
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Answer: A: Pileup error: line length exceeds XXX in sequence YYY
... Thanks for your feedbacks.  As you guessed, I'm a newbie, I've been playing with galaxy for 2 weeks, and frankly, I'm starting to loose it.  The end goal is to get a list of SNPs I can be confident with (I'm far from getting there,I'm just starting to understand how to map and filter my reads, but ...
written 3.3 years ago by morgane.moreau.info30
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Answer: A: Need help with "Map with BWA for Illumina" tool
... It just stays gray in my History (I can't ask for a debug) When I click on attributed it says  Required metadata values are missing. Some of these values may not be editable by the user. Selecting "Auto-detect" will attempt to fix these values. and in the database/built, my custom built reference ...
written 3.3 years ago by morgane.moreau.info30
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Need help with "Map with BWA for Illumina" tool
... Hi,  I've been mapping this sample many times without any problem.  Now I'm trying to do the exact same thing and it doesn't work. It seems like it doesn't find the metadata.  I mapped 2 other samples at the same time as this one, the other 2 worked fine but not this one. Any idea why is that so ...
map-with-bwa-for-illumina written 3.3 years ago by morgane.moreau.info30

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