User: Ali

gravatar for Ali
Ali20
Reputation:
20
Status:
New User
Location:
United States
Last seen:
4 days ago
Joined:
3 years, 2 months ago
Email:
a*********@hotmail.com

Posts by Ali

<prev • 7 results • page 1 of 1 • next >
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Comment: C: "Count.seqs" not running
... Yes I am working at https://usegalaxy.org ...
written 6 weeks ago by Ali20
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Comment: C: "Count.seqs" not running
... Hi Jennifer, All input data are fine, I tried count.seqs with the 16 Microbial Analysis with Mothur demo and it seemed to give this error as well! Thanks for your help, Ali ...
written 6 weeks ago by Ali20
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Answer: A: Mothur not working
... Thanks Jennifer! it is working fine now. ...
written 6 weeks ago by Ali20
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"Count.seqs" not running
... Hello, I am getting this error "TERM environment variable not set" when running toolshed.g2.bx.psu.edu/repos/iuc/mothur_count_seqs/mothur_count_seqs/1.36.1.0. I appreciate your help, Best, Ali ...
usegalaxy.org software error mothur written 6 weeks ago by Ali20 • updated 6 weeks ago by Jennifer Hillman Jackson23k
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Mothur not working
... Dear All In Mothur when doing make.contigs I am getting the below error: 'Fatal error: Exit code 127 () mothur: error while loading shared libraries: libboost_iostreams.so.1.57.0: cannot open shared object file: No such file or directory' Any clues why it is happening? Thanks for your help, Ali ...
galaxy written 8 weeks ago by Ali20
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Cuffdiff significant genes
... I am new to RNA-seq analysis and wanted to know what is the best approach to filter out significant genes from the cuffdiff output. The issue I have is I don't have replicates so my understanding I can't use p-values, would it be enough to just rely on the log2 fold change? I appreciate your help. ...
cuffdiff rna-seq written 3.1 years ago by Ali20
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Metagenomic Analysis and Megablast
... Hi, I am using the windshield splatter workflow to analyse my amplicons, However Galaxy Megablast can not handle Miseq PE reads due to the large nb of reads compared to 454. I appreciate if someone would suggest to me how it can be dealt with. 1- Doing local Megablast would still take huge amount ...
megablast written 3.2 years ago by Ali20 • updated 3.2 years ago by Jennifer Hillman Jackson23k

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Popular Question 18 months ago, created a question with more than 1,000 views. For Cuffdiff significant genes

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