User: jlocker

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jlocker0
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United States
Last seen:
2 weeks ago
Joined:
3 years, 11 months ago
Email:
j******@pitt.edu

Posts by jlocker

<prev • 6 results • page 1 of 1 • next >
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Bedgraph file problem
... I have received a set of BAM files generated from RNAseq (PE100) of the opossum, MonDom5. When I generate Bedgraph gene coverage files of this data, column 1 lists only a number without the chr designation, i.e., "1" not "chr1". I think this a problem with the BAM files, which do not have the tabu ...
mismatch bam rna-seq chromosome bedgraph written 5 months ago by jlocker0 • updated 5 months ago by Jennifer Hillman Jackson25k
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Bedgraph column 1
... I used Bedtools to generate Bedgraphs from Bam files. Column 1 only contains a number that is not preceded by chr. How do I fix this. ...
galaxy written 17 months ago by jlocker0 • updated 17 months ago by Jennifer Hillman Jackson25k
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Answer: A: Genome file for Bam to Bed or Genome Coverage
... Thanks. that was easy and fixed everything. ...
written 2.3 years ago by jlocker0
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Genome file for Bam to Bed or Genome Coverage
... I generated BAM (mm9) files in Tophat and tried to convert them to Bedgraphs using the BedTools program. This program now requires a genome file (BamtoBed also requires this), which is different from the last time I used the program. Is an mm9 file available on Galaxy, or do I have to upload it. If ...
bedtools written 2.3 years ago by jlocker0
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Bigwig to Wig or Bgr
... How can I convert a Bigwig file to Wig or Bgr? Is there a utility on Galaxy that can do this?   Thanks ...
galaxy written 2.5 years ago by jlocker0 • updated 2.5 years ago by Jennifer Hillman Jackson25k
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FTP file sender
... The University of Pittsburgh has suggested using FileSender.internet2.edu for uploading files. What is the Galaxy email address that I should use for transferring files? Thanks, Joe Locker ...
galaxy written 3.8 years ago by jlocker0 • updated 3.8 years ago by Martin Čech ♦♦ 4.8k

Latest awards to jlocker

Popular Question 5 months ago, created a question with more than 1,000 views. For Bigwig to Wig or Bgr
Popular Question 5 months ago, created a question with more than 1,000 views. For Genome file for Bam to Bed or Genome Coverage

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