User: jean-philippe.brosseau

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Posts by jean-philippe.brosseau

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How to judge the quantitativity of ChIPSeq?
... Hi, I have now been through my ChIP-Seq analyses with some success using the Galaxy platform up to visualization of peak in UCSC. I identify a couple of interesting region that will validate by ChIP-qPCR based on the qualitative difference between treated and non-treated or IP non-treated and INPUT ...
chip-seq summary statistics visualization ucsc written 3.5 years ago by jean-philippe.brosseau0 • updated 3.5 years ago by Jennifer Hillman Jackson24k
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Comment: C: Galaxy-like platform for microarrays?
... Thanks alot for your answer. I truly appreciate it. I will certainly have a closer look Best, Jean-Philippe ...
written 3.5 years ago by jean-philippe.brosseau0
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Comment: C: Galaxy-like platform for microarrays?
... What is a VN image? ...
written 3.5 years ago by jean-philippe.brosseau0
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Answer: A: Galaxy-like platform for microarrays?
... Thanks alot for your quick answer. Sounds like chipster required a significant amount of R programming and is not free. Any other options? Jean-Philippe ...
written 3.5 years ago by jean-philippe.brosseau0
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Galaxy-like platform for microarrays?
... The conceptual framework of Galaxy is truly attractive for non-programmer experimental biologist like me. I was wondering if there is a similar platform for microarray analysis?   ...
galaxy written 3.5 years ago by jean-philippe.brosseau0
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Comment: C: Transfer from one Galaxy server to another?
... When I try to do so, i get an empty file and the following message (although it goes to completion) Unable to fetch https://usegalaxy.org/datasets/bbd44e69cb8906b5be2ea87a3d394827/display?to_ext=fastqsanger [Errno socket error] [Errno 110] Connection timed out ...
written 3.5 years ago by jean-philippe.brosseau0
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Comment: C: Transfer from one Galaxy server to another?
... I can now see this icon that you are talking about but only on the usegalaxy site. I cannot see that icon on the galaxy site from my university, which the one that I want to upload some files. Is it normal? ...
written 3.5 years ago by jean-philippe.brosseau0
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Comment: C: Transfer from one Galaxy server to another?
... I didnt get it for #2 Where should I paste this URL? thanks! ...
written 3.5 years ago by jean-philippe.brosseau0
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Transfer from one Galaxy server to another?
... Hi! I am learning the basic of Galaxy by going through Blankenberg and Hillman-Jackson MethodsMolBiol2014. The mapping step is taking a while on the public server http://usegalaxy.org so I want to perform the learning procedure on a local galaxy server which is already install at my university. Wh ...
galaxy written 3.5 years ago by jean-philippe.brosseau0 • updated 24 months ago by Guy Reeves1.0k
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Comment: A: Galaxy 101: The first thing you should try do not work...
... thank for the answer. I was not aware of the Python 2.6 dependency. I never install any Python as I am not a programmer...   ...
written 3.5 years ago by jean-philippe.brosseau0

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