User: hss

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hss20
Reputation:
20
Status:
New User
Location:
United States
Last seen:
3 months, 1 week ago
Joined:
3 years, 4 months ago
Email:
h**@shcc.org

Posts by hss

<prev • 13 results • page 1 of 2 • next >
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Answer: A: MACS output files
... Hi Jennifer, Yes I ran MACS using batch mode providing two experimental datasets and 1 input control data set. I think everything ran as the two control wiggle data sets created for control vs experimental data set 1 and control vs experimental data set 2 are slighlty different in peak st ...
written 3 months ago by hss20
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MACS output files
... First time I have run MACS using Galaxy. I tried to DL the MACS paper from the web site but the link is dead. I have two experimental ChiPseq data sets and 1 input control for these two datasets. After running bowtie, I used MACS for peak calling. File numbers for the experimental data are ...
chip-seq written 3 months ago by hss20
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(Closed) wiggle file format
... Hello, For some reason my wig files are not being properly converted to bigWig format when I merge them into a single file. Here is an example of a merged file of the my ChIPseq data for the mouse Y and M chromosomes https://s3-us-west-2.amazonaws.com/hoxa13-gt-chipseq/Input/M+and+Y+concatenate ...
input wig-to-bigwig galaxy format written 15 months ago by hss20 • updated 15 months ago by Jennifer Hillman Jackson23k
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Which Concatenate tool help with an error in wig to BigWig conversion
... Hi there, I am not sure which concatenate tool to use to combine individual chromosome wig files into 1 file so that I can convert this merged file into 1 large BigWig file. I see two concatenate utilities on Galaxy: tail to head, and tail to head (cat) NEW I used the first utility yeste ...
wig-to-bigwig galaxy error written 15 months ago by hss20 • updated 15 months ago by Jennifer Hillman Jackson23k
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Answer: A: Wig to BigWig tool not working
... Thanks for the response. I am sending another larger concatenated wig over for conversion. Do you have any average estimate for the amount of time one should wait for the conversion? ...
written 15 months ago by hss20
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Wig to BigWig tool not working
... Hi, I am using several tools while logged into the Galaxy server today. All are executing in a timely manner except the Wig to BigWig converter. The file submitted for this conversion are stuck in a pending state. Can someone take a look at this and let me know if the program and its queing syst ...
galaxy software error written 15 months ago by hss20
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Comment: C: Public Galaxy stuck
... Still an issue for me, been waiting for a large wig file to convert to BigWig. Uploaded file is still grayed out awaiting examination. This was about 3 hours ago. ...
written 15 months ago by hss20
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(Closed) How backed up is the que?
... Received a message about 4 hours ago stating there was a problem with the clusters causing delays in file submissions being processed. Essentially the message was things were fixed, but the que for submitted files may be backed up. I have been waiting nearly 3 hours for my wig file to start conve ...
galaxy written 15 months ago by hss20
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Comment: C: Delay in running jobs
... Hi Nate, Just wanted to let you know that there is still an issue with the Galaxy Server running file conversions. I uploaded a 13GB dataset last evening and as of 7 AM pacific time it still has not run. This is a conversion from wiggle to BigWig. Scott H. Scott Stadler Ph.D. Associate Profe ...
written 15 months ago by hss20
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Comment: C: Delay in running jobs
... Hi Nate, Just wanted to let you know that there is still an issue with the Galaxy Server running file conversions. I uploaded a 13GB dataset last evening and as of 7 AM pacific time it still has not run. This is a conversion from wiggle to BigWig. ...
written 16 months ago by hss20

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Popular Question 2.3 years ago, created a question with more than 1,000 views. For How to add a custom color to BigWig files

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