User: raitis

gravatar for raitis
raitis20
Reputation:
20
Status:
New User
Location:
Latvia
Last seen:
1 year, 6 months ago
Joined:
4 years ago
Email:
r*****@biomed.lu.lv

Posts by raitis

<prev • 5 results • page 1 of 1 • next >
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Comment: C: Errors at http://usegalaxy.org - FTP, Upload, and others
... Thumbs up for each status update. Good luck with fixes. ...
written 20 months ago by raitis20
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Answer: A: ANNOVAR not working
... Hello, Now it seems that ANNOVAR tool is totally down. Got empty file and following (green) message:   605 ANNOVAR Annotate VCF on data 604 1 line format:tabular database:hg19 Log: tool progress Log: tool progress Can't use an undefined value as a symbol reference at /galaxy/main/deps/annovar ...
written 2.6 years ago by raitis20
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ANNOVAR not working
... Hello,   Tried using ANNOVAR Annotate VCF and got following message in return (tested with several files that worked before and different settings):   582 ANNOVAR Annotate VCF on data 379 empty formatvcf databasehg19 Log: tool progress Log: tool progress Unknown option: vcfinput Usage: tabl ...
software error written 2.6 years ago by raitis20 • updated 10 weeks ago by ximenabonilla0
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Answer: A: Partial alignment statistics
... Hi, Thank you for welcome and the answer. I have read available help documentation. Custom genome (spliced human genome) does not suit me because I will lose alignment at breakpoints (where read is located on border of splices, parts or bins whatever you call them). And as parts get smaller more i ...
written 4.0 years ago by raitis20
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Partial alignment statistics
... Hello,   I started using Galaxy some two weeks ago. I am not bioinformatician by training, but self tought molecular biologist working with HTS. Data I have come from semiconductor sequencing (PGM and Proton). Managed to get data in Galaxy, complete alignment, get some QC and summary statistics a ...
statistics coverage slicing written 4.0 years ago by raitis20 • updated 4.0 years ago by Jennifer Hillman Jackson25k

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Popular Question 2.5 years ago, created a question with more than 1,000 views. For Partial alignment statistics

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