User: jling

gravatar for jling
jling40
Reputation:
40
Status:
New User
Location:
United States
Last seen:
2 months, 2 weeks ago
Joined:
2 years, 9 months ago
Email:
j****@jhu.edu

Posts by jling

<prev • 22 results • page 1 of 3 • next >
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Comment: C: Reset Galaxy usage
... Ok sure. I actually tried that but maybe I was still logged in on a different computer. Nevertheless, thanks again ...
written 11 weeks ago by jling40
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Reset Galaxy usage
... Hi, Could someone help me reset my disk usage? I think there's a bug with deleted paused datasets still completing and counting towards disk usage. Thanks ...
disk usage written 11 weeks ago by jling40 • updated 11 weeks ago by Jennifer Hillman Jackson22k
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Answer: A: fastq.gz file downloaded from SRA
... Make sure the 'Datatype' is set to fastq.gz You can then 'Convert Format' from fastq.gz to fastq. That's how I've been unzipping ...
written 3 months ago by jling40
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Comment: C: How to unzip the fastq files to be used in Tophat?
... Click 'Edit Attributes', on the top click 'Convert Format' and select convert fastq.gz to fastq Tophat only takes fastqsanger for some reason so you have to change the datatype afterwards from fastq to fastqsanger ...
written 3 months ago by jling40
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Comment: C: Disk Usage, NCBI SRA Tools > Extract Reads fails to delete permanently
... Thank you very much. ...
written 3 months ago by jling40
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Answer: A: How to unzip the fastq files to be used in Tophat?
... Make sure your 'Datatype' is fastq.gz Then go to 'Convert Format' and convert it from fastq.gz to fastqsanger ...
written 3 months ago by jling40
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Comment: A: Disk Usage, NCBI SRA Tools > Extract Reads fails to delete permanently
... Also, just to confirm, I am aware that I need to 'Delete Permantently' regarding the datasets ...
written 3 months ago by jling40
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Disk Usage, NCBI SRA Tools > Extract Reads fails to delete permanently
... NCBI SRA Tools -> Extract reads in FASTQ/A format from NCBI SRA. I ran into this bug the last time I used this tool. The reads ended up taking too much space but when I tried to delete the fastq dataset list, it didn't update my disk usage. Please help, thanks ...
disk usage written 3 months ago by jling40 • updated 10 weeks ago by planetypus0
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Answer: A: Galaxy Disk Usage at 74% despite only using ~5Gb of space
... Great, thank you so much! ...
written 4 months ago by jling40
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Galaxy Disk Usage at 74% despite only using ~5Gb of space
... Hi, My disk usage is abnormally high. I'm familiar with the deletion process (i.e. "Purge Deleted Datasets") but I think there's an issue with some fastq collections that aren't getting purged. Can someone help look at my account data usage? Thanks, J ...
disk usage written 4 months ago by jling40

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