User: jling

gravatar for jling
jling60
Reputation:
60
Status:
New User
Location:
United States
Last seen:
4 months, 1 week ago
Joined:
3 years, 2 months ago
Email:
j****@jhu.edu

Posts by jling

<prev • 24 results • page 1 of 3 • next >
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Answer: A: Jobs failing due to Disk quota exceeded; only using 40% of 250Gb however
... Nevermind, jobs are running now; appears to be fixed ...
written 4 months ago by jling60
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Jobs failing due to Disk quota exceeded; only using 40% of 250Gb however
... Hi, It seems that I am unable to run any jobs due to "IOError: [Errno 122] Disk quota exceeded" Looks like it's the common error across multiple bug reports. However, I'm only using 40% of 250Gb Could someone look into this? Thanks ...
disk quota exceeded written 4 months ago by jling60
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Comment: C: Reset Galaxy usage
... Ok sure. I actually tried that but maybe I was still logged in on a different computer. Nevertheless, thanks again ...
written 7 months ago by jling60
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Reset Galaxy usage
... Hi, Could someone help me reset my disk usage? I think there's a bug with deleted paused datasets still completing and counting towards disk usage. Thanks ...
disk usage written 7 months ago by jling60 • updated 7 months ago by Jennifer Hillman Jackson23k
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Answer: A: fastq.gz file downloaded from SRA
... Make sure the 'Datatype' is set to fastq.gz You can then 'Convert Format' from fastq.gz to fastq. That's how I've been unzipping ...
written 8 months ago by jling60
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Comment: C: How to unzip the fastq files to be used in Tophat?
... Click 'Edit Attributes', on the top click 'Convert Format' and select convert fastq.gz to fastq Tophat only takes fastqsanger for some reason so you have to change the datatype afterwards from fastq to fastqsanger ...
written 8 months ago by jling60
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Comment: C: Disk Usage, NCBI SRA Tools > Extract Reads fails to delete permanently
... Thank you very much. ...
written 8 months ago by jling60
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Answer: A: How to unzip the fastq files to be used in Tophat?
... Make sure your 'Datatype' is fastq.gz Then go to 'Convert Format' and convert it from fastq.gz to fastqsanger ...
written 8 months ago by jling60
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Comment: A: Disk Usage, NCBI SRA Tools > Extract Reads fails to delete permanently
... Also, just to confirm, I am aware that I need to 'Delete Permantently' regarding the datasets ...
written 8 months ago by jling60
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Disk Usage, NCBI SRA Tools > Extract Reads fails to delete permanently
... NCBI SRA Tools -> Extract reads in FASTQ/A format from NCBI SRA. I ran into this bug the last time I used this tool. The reads ended up taking too much space but when I tried to delete the fastq dataset list, it didn't update my disk usage. Please help, thanks ...
disk usage written 8 months ago by jling60 • updated 7 months ago by planetypus0

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