User: jling

gravatar for jling
jling40
Reputation:
40
Status:
New User
Location:
United States
Last seen:
1 week, 1 day ago
Joined:
2 years, 6 months ago
Email:
j****@jhu.edu

Posts by jling

<prev • 20 results • page 1 of 2 • next >
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Answer: A: fastq.gz file downloaded from SRA
... Make sure the 'Datatype' is set to fastq.gz You can then 'Convert Format' from fastq.gz to fastq. That's how I've been unzipping ...
written 23 days ago by jling40
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Comment: C: How to unzip the fastq files to be used in Tophat?
... Click 'Edit Attributes', on the top click 'Convert Format' and select convert fastq.gz to fastq Tophat only takes fastqsanger for some reason so you have to change the datatype afterwards from fastq to fastqsanger ...
written 24 days ago by jling40
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Comment: C: Disk Usage, NCBI SRA Tools > Extract Reads fails to delete permanently
... Thank you very much. ...
written 24 days ago by jling40
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Answer: A: How to unzip the fastq files to be used in Tophat?
... Make sure your 'Datatype' is fastq.gz Then go to 'Convert Format' and convert it from fastq.gz to fastqsanger ...
written 24 days ago by jling40
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Comment: A: Disk Usage, NCBI SRA Tools > Extract Reads fails to delete permanently
... Also, just to confirm, I am aware that I need to 'Delete Permantently' regarding the datasets ...
written 26 days ago by jling40
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Disk Usage, NCBI SRA Tools > Extract Reads fails to delete permanently
... NCBI SRA Tools -> Extract reads in FASTQ/A format from NCBI SRA. I ran into this bug the last time I used this tool. The reads ended up taking too much space but when I tried to delete the fastq dataset list, it didn't update my disk usage. Please help, thanks ...
disk usage written 26 days ago by jling40 • updated 24 days ago by Jennifer Hillman Jackson21k
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Answer: A: Galaxy Disk Usage at 74% despite only using ~5Gb of space
... Great, thank you so much! ...
written 6 weeks ago by jling40
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Galaxy Disk Usage at 74% despite only using ~5Gb of space
... Hi, My disk usage is abnormally high. I'm familiar with the deletion process (i.e. "Purge Deleted Datasets") but I think there's an issue with some fastq collections that aren't getting purged. Can someone help look at my account data usage? Thanks, J ...
disk usage written 6 weeks ago by jling40
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Comment: C: Any Plans to add HISAT?
... It was only added a few days ago and it doesn't have any reference genomes available yet ...
written 14 months ago by jling40
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Is the public server still planning to implement HISAT?
... Is the public server still planning to implement HISAT anytime soon? I haven't been using Galaxy for RNA-seq recently because my data is too big to be processed on the normal servers and requires Stampede (which has too long of a wait time). ...
public server hisat rna-seq written 14 months ago by jling40 • updated 14 months ago by Jennifer Hillman Jackson21k

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