User: Antony Jose

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Antony Jose70
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70
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New User
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Last seen:
5 years, 7 months ago
Joined:
7 years, 6 months ago
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a***************@gmail.com

Posts by Antony Jose

<prev • 7 results • page 1 of 1 • next >
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Gene Bed To Codon Bed Not Working Properly
... Hi, When using the gene BED to codon BED tool, I noticed that it is not accurately reporting the codons that make up a gene. For example, some of the codon are missing (particularly ones that span exon-exon junctions. Also, when changing reading frame from one exon to the next, the codons are not r ...
written 5.6 years ago by Antony Jose70 • updated 5.6 years ago by Jennifer Hillman Jackson24k
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Comment: C: Bowtie And Bwa Queue..Other Jobs Dont
... Thank you Jen. My job is still waiting and we shall consider a cloud instance. Antony -- Antony M Jose, Dept. of Cell Biology & Molecular Genetics, University of Maryland, Rm 2116, Bioscience Research Building, College Park, MD - 20742. ...
written 5.7 years ago by Antony Jose70
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Bowtie And Bwa Queue..Other Jobs Dont
... Hi, Bowtie and BWA jobs seem to be forever on queue, but other jobs run normally. Is there a problem or is this expected? Thank you. Antony -- Antony M Jose, Dept. of Cell Biology & Molecular Genetics, University of Maryland, Rm 2116, Bioscience Research Building, College Park, MD - 20742. ...
bowtie alignment bwa written 5.7 years ago by Antony Jose70 • updated 5.7 years ago by Jennifer Hillman Jackson24k
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Long Wait On Jobs
... Hi, I started a workflow yesterday (user name: antonymerlinjose@gmail.com) and it still hasn't gone past being queued to run. In fact, no jobs are running. Please advice. Thank you. Antony -- Antony M Jose, Dept. of Cell Biology & Molecular Genetics, University of Maryland, Rm 2116, Bioscience ...
written 5.8 years ago by Antony Jose70 • updated 5.8 years ago by Jennifer Hillman Jackson24k
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Maq Consensus Calling Changes Quality Score Of The Read?
... Hi, We used the generate pileup tool with consensus base calling option using Maq with default options. In the output, the quality scores of the bases were changed. For example if the input score of bases in the SAM file were 'IIJIH'. They were changed to '22321'. Is this a glitch or is this expecte ...
written 6.0 years ago by Antony Jose70 • updated 5.8 years ago by Jennifer Hillman Jackson24k
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Maq Consensus Calling Changes Quality Score Of The Read?
... Hi, We used the generate pileup tool with consensus base calling option using Maq. In the output, the quality scores of the bases were changed. For example if the input score of bases in the SAM file were 'IIJIH'. They were changed to '22321'. Is this a glitch or is this expected? Thank you. Antony ...
written 6.0 years ago by Antony Jose70
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Mapping Unmapped Sequences To Other Guessed Contaminants
... Hi, I am a relatively new user to Galaxy. Of the 21 million mappable illumina reads, 17 million mapped to a reference genome. I would like to know if the remaining 4 million come from a known contaminating sequence for which I have a .txt file. Is there an easy way of doing this in Galaxy? Please a ...
galaxy written 7.6 years ago by Antony Jose70 • updated 7.6 years ago by Jennifer Hillman Jackson24k

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