User: kr81

gravatar for kr81
kr8110
Reputation:
10
Status:
New User
Location:
Australia
Last seen:
2 years, 10 months ago
Joined:
4 years ago
Email:
k******************@gmail.com

Posts by kr81

<prev • 3 results • page 1 of 1 • next >
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RNA-seq analysis for a small number of genes
... Hi all, I am new to RNA seq analysis and want to look at the expression of a small number of genes (8) in some publicly available RNA seq datasets. I came up with a simple method that avoids me having to align the RNA seq reads to the genome and do a full tophat/cufflinks analysis (or similar). Br ...
express fpkm bowtie2 rna-seq written 2.9 years ago by kr8110 • updated 2.9 years ago by Jennifer Hillman Jackson25k
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SAMtools Merge BAM files hangs
... Hi all, I am using TopHat to map RNA-seq reads. My study species is a non-model organism, so I created a custom genome build in order to do this. The first time I tried to map, I got an error message (reference sequence has more than 2^32-1 characters), so I split the genome in two, created two bui ...
bam samtools galaxy written 3.0 years ago by kr8110 • updated 3.0 years ago by Jennifer Hillman Jackson25k
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Lastz hangs waiting to run
... Hi all, I have been trying to use Lastz to map an SRA dataset to a small FASTA file containing 16 amplicon sequences using the Galaxy main instance. I did a test analysis with one single amplicon sequence and the job ran to completion. When I start a job with the FASTA containing all 16 sequences, ...
cloudman galaxy lastz written 3.0 years ago by kr8110 • updated 3.0 years ago by Jennifer Hillman Jackson25k

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