Moderator: Nate Coraor

gravatar for Nate Coraor
Nate Coraor3.0k
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Last seen:
14 hours ago
Joined:
10 years, 10 months ago
Email:
n***@bx.psu.edu

Posts by Nate Coraor

<prev • 303 results • page 1 of 31 • next >
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Answer: A: Trinity still not running
... Trinity jobs should be moving again. Sorry about the hold up. ...
written 14 hours ago by Nate Coraor3.0k
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Answer: A: Trinity run failed at start- please help
... Hi Gia, This looks like a filesystem problem on [Bridges][1], where Trinity runs. Could you try the job again and let us know if it encounters the same error please? Thanks, --nate [1]: https://www.psc.edu/bridges ...
written 8 days ago by Nate Coraor3.0k
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Answer: A: Gradual Loss of Connection to Galaxy
... We've been investigating some issues that could be related to this for the past week. Has it gotten any better in the last 2 days? When it happens, could you open your browser's developer tools and note any error messages that appear in the console there? ...
written 9 weeks ago by Nate Coraor3.0k
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Answer: A: Tunnel qsub commands
... Hi Manuel, I'd suggest you take a look at the CLI job runner. It is documented in job_conf.xml.sample_advanced and is designed to do exactly what you're looking to do here. ...
written 3 months ago by Nate Coraor3.0k
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Comment: C: ImportError: No module named bigbed_file
... Thanks for posting all of this, it's very informative. What's interesting here is that pip is not downloading the prebuilt binary wheels on wheels.galaxyproject.org, which is why you're having to go through all the trouble of installing all the dependencies of building them from source. What versio ...
written 3 months ago by Nate Coraor3.0k
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Comment: C: ImportError: No module named bigbed_file
... What version of pip are you using? ...
written 3 months ago by Nate Coraor3.0k
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News: Announcing the October 2016 (v16.10) Galaxy Release
... The Galaxy Committers team is pleased to announce the October 2016 (v16.10) release of Galaxy. For full details on all of the enhancements and fixes in this release, please see the [release notes][1]. [1]: https://docs.galaxyproject.org/en/master/releases/16.10_announce.html Thanks for using Ga ...
16.10 news galaxy release getgalaxy written 4 months ago by Nate Coraor3.0k • updated 4 months ago by Jennifer Hillman Jackson22k
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Answer: A: Blank Workflow page when trying to run it
... Hi Carlos, If you open up the browser console before clicking run, is anything logged there? Also, any errors in the Galaxy web server and/or proxy server logs? --nate ...
written 4 months ago by Nate Coraor3.0k
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Answer: A: Errors at http://usegalaxy.org - Follow for details and updates
... Hi all, Just to provide a bit of an update, we have been planning a storage system move from [Corral](https://www.tacc.utexas.edu/systems/corral) 2 to Corral 3 (it is a storage service provided by our host, the [Texas Advanced Computing Center (TACC)](https://www.tacc.utexas.edu)). The move was ori ...
written 4 months ago by Nate Coraor3.0k
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Comment: C: HISAT2 Error "OSError: [Errno 2] No such file or directory" (local Galaxy)
... Galaxy should inherit the environment then. You're not setting `$PATH` in a job destination or anything like that, are you? You may need to add some debugging output to determine exactly what environment the metadata script is being run under. You can also disable job cleanup in `galaxy.ini` to see ...
written 6 months ago by Nate Coraor3.0k

Latest awards to Nate Coraor

Scholar 3 months ago, created an answer that has been accepted. For A: Tunnel qsub commands
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Errors at http://usegalaxy.org - Follow for details and updates
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Errors at http://usegalaxy.org - Follow for details and updates
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: DynamicDisplayApplicationBuilder error after updating Galaxy to latest_2014.10.0
Popular Question 19 months ago, created a question with more than 1,000 views. For Upload To Galaxy Via Ftp
Scholar 2.4 years ago, created an answer that has been accepted. For A: DynamicDisplayApplicationBuilder error after updating Galaxy to latest_2014.10.0
Teacher 2.5 years ago, created an answer with at least 3 up-votes. For A: When will stampede be accessible through galaxy main?
Scholar 2.6 years ago, created an answer that has been accepted. For A: When will stampede be accessible through galaxy main?
Teacher 2.6 years ago, created an answer with at least 3 up-votes. For A: When will stampede be accessible through galaxy main?
Teacher 2.9 years ago, created an answer with at least 3 up-votes. For A: Galaxy 101: The first thing you should try do not work...
Centurion 3.1 years ago, created 100 posts.

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