Admin: Jennifer Hillman Jackson

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Jennifer Hillman-Jackson

Galaxy Application Support
http://usegalaxy.org
http://galaxyproject.org
http://biostar.usegalaxy.org

Posts by Jennifer Hillman Jackson

<prev • 6,387 results • page 2 of 639 • next >
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Comment: C: Trim Galore run time issue
... Hello ilia.belotserkovsky! Questions similar to yours can already be found at: Job execution delays at Galaxy Main https://usegalaxy.org We have closed your question to allow us to keep similar content in the same thread. If you disagree with this please tell us why in a reply ...
written 3 days ago by Jennifer Hillman Jackson25k
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Comment: C: jobs gray for too long
... Hello jenyka_dm! Questions similar to yours can already be found at: Job execution delays at Galaxy Main https://usegalaxy.org We have closed your question to allow us to keep similar content in the same thread. If you disagree with this please tell us why in a reply below. We' ...
written 3 days ago by Jennifer Hillman Jackson25k
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Answer: A: Server queue problem
... Hello, The queue has been very busy at Galaxy Main https://usegalaxy.org and should clear up soon. Leave your queued jobs queued and they will process. Avoid deleting/restarting, as this places the new jobs back at the end of the queue, extending wait time. Thanks! Jen, Galaxy team ...
written 3 days ago by Jennifer Hillman Jackson25k
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Answer: A: CuffDiff not working with CXB files
... Hello, The developers are still looking at the problem and we consider this a priority fix. I created a ticket specifically for this problem (using a simpler tool, but one that presents with the same behavior), please follow for updates: https://github.com/galaxyproject/usegalaxy-playbook/issues/12 ...
written 4 days ago by Jennifer Hillman Jackson25k
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Comment: C: FreeBayes doesn't use workflow variable
... I haven't tested this function with Freebayes specifically for some time. Doing so now. More feedback soon. Jen, Galaxy team ...
written 4 days ago by Jennifer Hillman Jackson25k
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Answer: A: Extract aligned exactly 1 time fron Bowtie2?
... Hello, This forum is focused on Galaxy usage, so I'll give you two way to do this. **Line command help** for a similar query is posted at Biostars (general): - https://www.biostars.org/p/95929/ **To do the same filtering in Galaxy**, use one of these tools: - NGS: SAMtools > Filter SAM on ...
written 4 days ago by Jennifer Hillman Jackson25k
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Answer: A: problems with installing a tool from Galaxy tool shed
... Hello, I found this prior Q&A that sounds like it might be your problem as well: https://biostar.usegalaxy.org/p/8548/ I am not sure how the other user was able to access the admin tools if not actually an admin in the configuration files, but when they cleared that up and importantly, **resta ...
written 4 days ago by Jennifer Hillman Jackson25k
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Comment: C: problems with installing a tool from Galaxy tool shed
... Which version of Trinity are you installing? Please reference by the Tool Shed's repository link and confirm you are targetting the latest version. https://usegalaxy.org/toolshed ...
written 4 days ago by Jennifer Hillman Jackson25k
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Answer: A: RNA STAR error
... Hello, RNA STAR uses much more memory than the other mapping tools. It looks like your job exceeded the memory allocated to the tool (the maximum). Please considering using HISAT2 instead. That said, input problems can contribute to job failures. Please see this FAQ for troubleshooting help: http ...
written 4 days ago by Jennifer Hillman Jackson25k
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Answer: A: RSEM "Unable to finish job" but output data seem to be OK
... Hello, Did you prepare the input with the tool "RSEM prepare reference" first? If so, there might be a bug in the tool suite versus the latest Galaxy version. These tools were last updated in 2016 and much has changed since then. First, check the required tool dependencies and that are these cor ...
written 4 days ago by Jennifer Hillman Jackson25k

Latest awards to Jennifer Hillman Jackson

Scholar 6 days ago, created an answer that has been accepted. For A: Star-Fusion last-matching gene pairs file
Scholar 13 days ago, created an answer that has been accepted. For A: Upload to the Galaxy ftp server
Scholar 18 days ago, created an answer that has been accepted. For A: How to know if mapping to reference genome was succesful?
Scholar 19 days ago, created an answer that has been accepted. For A: Trinity- error setting metadata
Scholar 27 days ago, created an answer that has been accepted. For A: Need help with "Reorder SAM/BAM" tool
Popular Question 4 weeks ago, created a question with more than 1,000 views. For Re: Mitochondrial Transcripts
Scholar 4 weeks ago, created an answer that has been accepted. For C: Error using DataManager to fetch a reference genome
Scholar 4 weeks ago, created an answer that has been accepted. For A: Star-Fusion last-matching gene pairs file
Scholar 5 weeks ago, created an answer that has been accepted. For A: How to delete workflow from list of published workflows
Popular Question 5 weeks ago, created a question with more than 1,000 views. For Load Data From Galaxy To Igv
Scholar 5 weeks ago, created an answer that has been accepted. For A: Error in Galaxy - ''Fatal error: The HTSeq python package is not properly instal
Great Question 5 weeks ago, created a question with more than 5,000 views. For Get Galaxy! Your own Local Server
Teacher 7 weeks ago, created an answer with at least 3 up-votes. For A: Mapping paired reads to reference genome, variant calling
Scholar 7 weeks ago, created an answer that has been accepted. For A: Jobs starting to run and then stopping
Teacher 7 weeks ago, created an answer with at least 3 up-votes. For A: bowtie2 out of memory
Scholar 9 weeks ago, created an answer that has been accepted. For A: How to know if mapping to reference genome was succesful?
Scholar 9 weeks ago, created an answer that has been accepted. For A: 'Hidden' Galaxy features which are really useful /
Scholar 9 weeks ago, created an answer that has been accepted. For A: How get Cancer WGS for analysis in Galaxy
Scholar 10 weeks ago, created an answer that has been accepted. For A: Need help with "Filter pileup" tool: not recognizing pileup data in "Select Data
Scholar 10 weeks ago, created an answer that has been accepted. For A: Illumina DNA sequence upload problem
Scholar 10 weeks ago, created an answer that has been accepted. For A: Uploading NCBI Genome
Scholar 11 weeks ago, created an answer that has been accepted. For A: Qiime file not found error
Scholar 11 weeks ago, created an answer that has been accepted. For A: Qiime file not found error
Great Question 11 weeks ago, created a question with more than 5,000 views. For Welcome to Galaxy Biostar
Cylon 11 weeks ago, received 1,000 up votes.

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