Admin: Jennifer Hillman Jackson

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Jennifer Hillman-Jackson

Galaxy Application Support
http://usegalaxy.org
http://galaxyproject.org
http://biostar.usegalaxy.org

Posts by Jennifer Hillman Jackson

<prev • 6,897 results • page 2 of 690 • next >
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Answer: A: Exporting workflow from tool shed respository
... Hello, This is an older repository with some custom tools, so it might not work under newer Galaxy versions. But you can try, or you can use more current workflows (an easier choice). If this is your own Galaxy server, first try installing the repository. If working at some public Galaxy, or one ...
written 2 days ago by Jennifer Hillman Jackson25k
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Comment: C: how prepare File containing a mapping of transcripts to genes under Salmon
... If you can reproduce the error at https://usegalaxy.org, the bug report can be submitted. ...
written 2 days ago by Jennifer Hillman Jackson25k
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Comment: C: how prepare File containing a mapping of transcripts to genes under Salmon
... This error indicates that the job is running out of resources. - Did you filter the transcriptome fasta to only include complete full-length transcripts? - Are the sequence identifiers in that custom transcriptome an exact match from the transcript_id names in your reference annotation (whether ...
written 4 days ago by Jennifer Hillman Jackson25k
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Answer: A: Green error report from usegalaxy.eu from InterProScan - OPEN, see linked issue
... Hello, Also posted at GalaxyProject.org Gitter: https://gitter.im/galaxyproject/Lobby?at=5bc4da87e65a634336e30593 The tool wrapped hasn't been updated since 2013, so that particular Java issue may or may not be the root of the problem. Let's see what the wrapper author and admins for the https://u ...
written 5 days ago by Jennifer Hillman Jackson25k
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Comment: C: how prepare File containing a mapping of transcripts to genes under Salmon
... Hello, For this case, the field "name" is the transcript identifier and "name2" is the gene identifier. Just pick to download those two fields and you'll have the correct data for the two column tabular file. Alternatively, you can get the transcript/gene from the fasta header lines (the first two ...
written 5 days ago by Jennifer Hillman Jackson25k
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Answer: A: Galaxy differential expression starting from raw FASTQ files
... Hello, The DE workflow here is for RNA-seq data. https://galaxyproject.org/learn/ - *RNA-seq: Discovering and quantifying new transcripts - an in-depth transcriptome analysis example*. https://galaxyproject.org/tutorials/nt_rnaseq More RNA-seq tutorials are available from the Galaxy Training Net ...
written 5 days ago by Jennifer Hillman Jackson25k
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Comment: C: Jobs not running- Is the main galaxy server down?
... Thanks for posting back! ...
written 5 days ago by Jennifer Hillman Jackson25k
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Comment: C: Workflows don't execute after successfully being invoked at https://usegalaxy.or
... Thanks again and please follow the updates here: https://biostar.usegalaxy.org/p/28818/#29695 ...
written 5 days ago by Jennifer Hillman Jackson25k
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Comment: C: Workflows don't execute after successfully being invoked at https://usegalaxy.or
... **Update 10-15-2018 10:40 am PST** The datasets produced by the workflow will eventually show up in the new history, queue, and execute. This delay is being worked on. Ticket: https://github.com/galaxyproject/usegalaxy-playbook/issues/168 Until fixed, please start up the workflow and do not delete ...
written 5 days ago by Jennifer Hillman Jackson25k
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Answer: A: Bowtie2/Samtools files are not visualized with Trackster: Fatal error Exit code
... Hello, Check to see if the database is assigned for these datasets. My guess is that it is not and instead, a placeholder of "?" is assigned. The database must match the genome/build of the genome used in Trackster. This can be a built-in genome build or a custom genome that has been promoted to a ...
written 8 days ago by Jennifer Hillman Jackson25k

Latest awards to Jennifer Hillman Jackson

Scholar 15 days ago, created an answer that has been accepted. For A: Which Galaxy tool can concatenate fastq files from different lanes of flow-cell?
Popular Question 22 days ago, created a question with more than 1,000 views. For November 24, 2010 Galaxy Development News Brief
Scholar 23 days ago, created an answer that has been accepted. For A: looking for way to search through tracks for genes in Trackster
Popular Question 4 weeks ago, created a question with more than 1,000 views. For Welcome to Galaxy Biostar
Popular Question 5 weeks ago, created a question with more than 1,000 views. For Re: Mitochondrial Transcripts
Popular Question 6 weeks ago, created a question with more than 1,000 views. For November 24, 2010 Galaxy Development News Brief
Scholar 8 weeks ago, created an answer that has been accepted. For A: Upload at usegalaxy.org producing Internal Server Error (500) directly or failin
Scholar 8 weeks ago, created an answer that has been accepted. For A: SAM-to-BAM 'Failed runtime validation of Using reference genome' Error - Local G
Teacher 11 weeks ago, created an answer with at least 3 up-votes. For A: Mapping paired reads to reference genome, variant calling
Scholar 11 weeks ago, created an answer that has been accepted. For A: CuffDiff Replicates - which files do replicates 0, 1, 2 point to?
Teacher 11 weeks ago, created an answer with at least 3 up-votes. For A: Mapping paired reads to reference genome, variant calling
Scholar 11 weeks ago, created an answer that has been accepted. For A: Star-Fusion last-matching gene pairs file
Scholar 12 weeks ago, created an answer that has been accepted. For A: Checking coverage of yeast whole genome sequencing data
Scholar 12 weeks ago, created an answer that has been accepted. For A: DEPRECATED tools in Galaxy
Popular Question 12 weeks ago, created a question with more than 1,000 views. For Installing Galaxy On My Computer
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Mapping paired reads to reference genome, variant calling
Scholar 3 months ago, created an answer that has been accepted. For A: Need help with "Stitch MAF blocks" tool
Scholar 3 months ago, created an answer that has been accepted. For A: Configure file path for storing datasets
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Mapping paired reads to reference genome, variant calling
Scholar 4 months ago, created an answer that has been accepted. For A: Two instances on different server with only one postgres database ?
Popular Question 4 months ago, created a question with more than 1,000 views. For Mean Inner Distance
Scholar 4 months ago, created an answer that has been accepted. For A: Jobs starting to run and then stopping
Scholar 4 months ago, created an answer that has been accepted. For A: Multi-Join shows Error
Scholar 5 months ago, created an answer that has been accepted. For A: Star-Fusion last-matching gene pairs file
Scholar 5 months ago, created an answer that has been accepted. For A: Upload to the Galaxy ftp server

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