Admin: Jennifer Hillman Jackson

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Jennifer Hillman-Jackson

Galaxy Application Support
http://usegalaxy.org
http://galaxyproject.org
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Posts by Jennifer Hillman Jackson

<prev • 6,979 results • page 1 of 698 • next >
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Comment: C: Multifactor RNA-Seq analysis and interation terms
... Hello Lance Parsons! It appears that your post has been cross-posted to another site: This is probably better answered on the galaxy-dev list. My guess is the wrapper will need an update. http://dev.list.galaxyproject.org/Multifactor-RNA-Seq-Analysis-and-interaction-terms-td4671648.htm Ref: - Re ...
written 3 hours ago by Jennifer Hillman Jackson25k
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Comment: C: How to I add a genome to Database/Build?
... If you do not want the encoded consensus, try NGS: SAMtools > Pileup-to-Interval. The consensus sequence from a pileup dataset is not the same as an assembly. These are short regions where variation was detected and reported. ...
written 5 hours ago by Jennifer Hillman Jackson25k
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Comment: C: How long is the waiting time for a job to run?
... Hello writetoroopali! Questions similar to yours can already be found at: How to open the tabular file in R obtained from featureCounts? We have closed your question to allow us to keep similar content in the same thread. If you disagree with this please tell us why in a reply ...
written 17 hours ago by Jennifer Hillman Jackson25k
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Comment: C: API authentication required for this request error on first access to Galaxy aft
... `localhost:4432` is the URL where the problem came up originally, yes? But now it is resolved? ...
written 2 days ago by Jennifer Hillman Jackson25k
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Answer: A: error in workflow
... Hello, Try opening the workflow in the workflow editor. Warnings about what tools/tool-versions may be included in it, that are no longer available on that server, will be shown during loading. Then edit the workflow to resolve any of those issues (replace tools, reconnect noodles). In some cases, ...
written 2 days ago by Jennifer Hillman Jackson25k
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Answer: A: Visualizing RNA STAR Bam file
... Hello, It sounds like something went wrong during this step, or possibly an upstream step: https://galaxyproject.github.io/training-material/topics/transcriptomics/tutorials/ref-based/tutorial.html#mapping-1. Double check the settings/inputs and especially the target genome mapped against (rn6). ...
written 2 days ago by Jennifer Hillman Jackson25k
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Answer: A: How long is the waiting time for a job to run?
... Hello, Tools will run when resources are available at most Galaxy servers. This can take up to a day at Galaxy Main https://usegalaxy.org yet is usually much quicker. This depends a bit on how busy the server is, the type of job, how many were queued by the same end-user -- please see the FAQ below ...
written 3 days ago by Jennifer Hillman Jackson25k
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Comment: C: remove new line in a FASTA file
... *Admin update:* The wiki was migrated to the newer https://galaxyproject.org/ site. This CG help is mostly the same, with a few updates to reflect changes in Galaxy since the original post was made. The original link redirects to the help here now: **Support FAQs:** https://galaxyproject.org/suppor ...
written 3 days ago by Jennifer Hillman Jackson25k
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Comment: C: Duplicate row name error using Limma with count files without a header. Try usin
... Ok, thanks for explaining. The headers in your data differ from those on the tool form examples. I would suggest modifying the data columns included and the headers to match the examples to see if that resolves the job error. Many tools are picky about expected input formats/labels. ...
written 4 days ago by Jennifer Hillman Jackson25k
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Answer: A: Kraken bacterial classification mismatch
... Hello, The Kraken databases that Galaxy includes are available from the source. If you create/install Bacterial in your local, the results will be similar to those at Galaxy Main https://usegalaxy.org. Kraken Data Manager: https://toolshed.g2.bx.psu.edu/view/devteam/data_manager_build_kraken_data ...
written 4 days ago by Jennifer Hillman Jackson25k

Latest awards to Jennifer Hillman Jackson

Scholar 4 days ago, created an answer that has been accepted. For A: remove new line in a FASTA file
Scholar 4 weeks ago, created an answer that has been accepted. For A: Can't Rsync bacterial genomes
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Popular Question 7 weeks ago, created a question with more than 1,000 views. For November 24, 2010 Galaxy Development News Brief
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Scholar 12 weeks ago, created an answer that has been accepted. For A: Upload at usegalaxy.org producing Internal Server Error (500) directly or failin
Scholar 12 weeks ago, created an answer that has been accepted. For A: SAM-to-BAM 'Failed runtime validation of Using reference genome' Error - Local G
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