Admin: Jennifer Hillman Jackson

Reputation:
21,700
Status:
Trusted
Location:
United States
Website:
https://www.linkedin.c...
Last seen:
5 hours ago
Joined:
6 years, 11 months ago
Email:
j**@galaxyproject.org

Jennifer Hillman-Jackson

Galaxy Application Support
http://usegalaxy.org
http://galaxyproject.org
http://biostar.usegalaxy.org

Posts by Jennifer Hillman Jackson

<prev • 4,834 results • page 1 of 484 • next >
0
votes
1
answer
87
views
1
answers
Comment: C: Job delays or failures at http://usegalaxy.org
... Yes, there were more problems yesterday. Our administrator continues to monitor and restart jobs as needed. The guidelines above are still valid. Rerunning too soon can mean that you'll lose your place in the queue. But a small number of older queued jobs will be lost and need to be restarted. We u ...
written 12 hours ago by Jennifer Hillman Jackson22k
0
votes
1
answer
943
views
1
answers
Comment: C: CPU utilization with galaxy
... Hi Andrew, Would you please post this as a new question? I'll come back after and remove this comment so there will not be duplication. Thanks! Jen, Galaxy team ...
written 1 day ago by Jennifer Hillman Jackson22k
0
votes
1
answer
19
views
1
answers
Answer: A: Problem with Tophat
... Hello, Unfortunately, **Tophat** can produce output like this. Click on the option to reset the metadata and then start-up downstream job after that is complete. If any downstream jobs have already failed with the data before correction, those should be rerun. **A better RNA-seq mapping tool is ** ...
written 1 day ago by Jennifer Hillman Jackson22k
0
votes
1
answer
21
views
1
answers
Answer: A: Files queued in cufflinks for 4-5 days
... Hello, There have been recent cluster issues. Please see this post for how to proceed for now: https://biostar.usegalaxy.org/p/23219/#23225 For your case, I would rerun if the jobs have not started up by now. This is a non-standard solution only to be used for this time window. Thanks and our apo ...
written 1 day ago by Jennifer Hillman Jackson22k
0
votes
1
answer
19
views
1
answers
Answer: A: stacked RNA-seq workflow
... Hello, There have been job delays. Please see this post for how to proceed: https://biostar.usegalaxy.org/p/23219/#23225 Thanks! Jen, Galaxy team ...
written 1 day ago by Jennifer Hillman Jackson22k
0
votes
0
answers
26
views
0
answers
Comment: C: Filter Varscan VCF
... The example lines cannot be seen in the attached graphic (it must be a publicly accessible link). Instead, you can write back with sample text in a reply comment with the content *in quotes or with block text formatting* (this matters for readability) or possibly a *shared [gist][1] link* if you ha ...
written 1 day ago by Jennifer Hillman Jackson22k
0
votes
1
answer
36
views
1
answers
Answer: A: Cufflinks not running for more than 24 hours
... Update for job delays and/or cluster failures at http://usegalaxy.org 5-22-2017: https://biostar.usegalaxy.org/p/23219/#23225 ...
written 1 day ago by Jennifer Hillman Jackson22k
0
votes
1
answer
71
views
1
answers
Comment: C: Run time of processes in Galaxy
... Yes, this information is available to users set as admin on the Galaxy server in use. Hope yours is able to help! Jen ...
written 1 day ago by Jennifer Hillman Jackson22k
0
votes
2
answers
63
views
2
answers
Answer: A: Job delays at http://usegalaxy.org (all including upload)
... Update for job delays and/or cluster failures at http://usegalaxy.org 5-22-2017: https://biostar.usegalaxy.org/p/23219/#23225 ...
written 1 day ago by Jennifer Hillman Jackson22k
0
votes
1
answer
36
views
1
answers
Answer: A: Salmon in que for over 48 hours.
... Update for job delays and/or cluster failures at http://usegalaxy.org 5-22-2017: https://biostar.usegalaxy.org/p/23219/#23225 ...
written 1 day ago by Jennifer Hillman Jackson22k

Latest awards to Jennifer Hillman Jackson

Scholar 5 days ago, created an answer that has been accepted. For A: filter by fasta ids
Scholar 6 days ago, created an answer that has been accepted. For A: Extract Genomic DNA error with custom genome
Popular Question 7 days ago, created a question with more than 1,000 views. For Get Galaxy! Your own Local Server
Popular Question 8 days ago, created a question with more than 1,000 views. For About Galaxy !
Scholar 27 days ago, created an answer that has been accepted. For A: bowtie2 out of memory
Teacher 27 days ago, created an answer with at least 3 up-votes. For A: bowtie2 out of memory
Scholar 5 weeks ago, created an answer that has been accepted. For C: Error using DataManager to fetch a reference genome
Scholar 7 weeks ago, created an answer that has been accepted. For A: Each sample as a condition? - cuffdiff
Scholar 8 weeks ago, created an answer that has been accepted. For A: Can I get back "Operate on Genomic Interval" on local Galaxy instance?
Scholar 10 weeks ago, created an answer that has been accepted. For A: DEPRECATED tools in Galaxy
Scholar 11 weeks ago, created an answer that has been accepted. For C: AddOrReplaceReadGroups Fatal error
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: bowtie2 out of memory
Scholar 3 months ago, created an answer that has been accepted. For A: Upload to the Galaxy ftp server
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: HISAT2 - no reference genome available
Scholar 3 months ago, created an answer that has been accepted. For A: Help with intersect -BedTools, WindowBed
Scholar 3 months ago, created an answer that has been accepted. For A: Extract Genomic DNA error with custom genome
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: HISAT2 - no reference genome available
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: HISAT2 - no reference genome available
Scholar 4 months ago, created an answer that has been accepted. For A: HTseq runs fail
Scholar 5 months ago, created an answer that has been accepted. For A: DEPRECATED tools in Galaxy
Scholar 5 months ago, created an answer that has been accepted. For A: Illumina DNA sequence upload problem
Scholar 5 months ago, created an answer that has been accepted. For A: fastq-dump on Galaxy?
Scholar 6 months ago, created an answer that has been accepted. For A: Reads on Y chromosome while doing sequecing with a female donor
Scholar 7 months ago, created an answer that has been accepted. For A: Too few reads after VarScan on RNA-Seq data?
Scholar 7 months ago, created an answer that has been accepted. For A: extrect sequences according to a tabular

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 98 users visited in the last hour