Admin: Jennifer Hillman Jackson

Reputation:
21,960
Status:
Trusted
Location:
United States
Website:
https://www.linkedin.c...
Last seen:
10 hours ago
Joined:
7 years ago
Email:
j**@galaxyproject.org

Jennifer Hillman-Jackson

Galaxy Application Support
http://usegalaxy.org
http://galaxyproject.org
http://biostar.usegalaxy.org

Posts by Jennifer Hillman Jackson

<prev • 4,969 results • page 1 of 497 • next >
0
votes
1
answer
79
views
1
answers
Answer: A: a bug in galaxy/lib/galaxy/web/framework/helpers/grids.py
... Hi, Would you please open an issue ticket that describes the context of the problem and the resolution at Github? A pull request (with the code modification) against the repository can be linked in and our development team will respond. https://github.com/galaxyproject/galaxy/issues Thank you for ...
written 3 days ago by Jennifer Hillman Jackson22k
1
vote
1
answer
50
views
1
answers
Comment: C: Reference genome for RNA STAR
... RNA STAR indexes are ready to use at Galaxy Main (http://usegalaxy.org). List of genomes: https://github.com/galaxyproject/galaxy/issues/1470#issuecomment-307517254 Thanks everyone for their patience while we prepared the data and scaled up the memory for the tool! ...
written 3 days ago by Jennifer Hillman Jackson22k
0
votes
1
answer
90
views
1
answers
Answer: A: is Galaxy down?
... Hello, Yes, the Galaxy Main server at http://usegalaxy.org was down for a short time and **is now back up.** Follow @galaxyproject on Twitter for news and updates: https://twitter.com/galaxyproject/status/878238860580446208 Server status is also posted here: https://status.galaxyproject.org/ We ...
written 3 days ago by Jennifer Hillman Jackson22k
0
votes
3
answers
70
views
3
answers
Comment: C: how to merge multiple cufflink data in one file
... If the mm10 iGenomes GTF file was used with the tool along with the natively indexed mm10 genome at http://usegalaxy.org, then the mismatch problem is unlikely to be the root problem. The iGenomes file to use is mm10 "genes.gtf" ([from the UCSC archive][1]). This is different than using a gtf from t ...
written 4 days ago by Jennifer Hillman Jackson22k
0
votes
1
answer
97
views
1
answers
Comment: C: Multiple Intersect in ChIPseq analysis
... Hello georgess.dan! Questions similar to yours can already be found at: How to Intersect Replicates in ChIPseq workflow We have closed your question to allow us to keep similar content in the same thread. If you disagree with this please tell us why in a reply below. We'll be h ...
written 4 days ago by Jennifer Hillman Jackson22k
0
votes
1
answer
47
views
1
answers
Answer: A: Counts per million to differential expression
... Hello Reuben, In Galaxy, there are several tools available for count-based differential expression analysis (**DEXSeq**, **DeSeq2**, others in the [Main Tool Shed][1] - but probably not **Cuffdiff**). However, those wrapped for Galaxy are expecting specific inputs (usually from other Galaxy-wrapped ...
written 4 days ago by Jennifer Hillman Jackson22k
0
votes
1
answer
50
views
1
answers
Answer: A: Reference genome for RNA STAR
... Hello Vesna, We are working to add the indexes right now for a subset of databases. These are the [initial genomes that will be added along with status.][1] You can wait for the deployment to Galaxy Main (http://usegalaxy.org) - OR - if your database is not included in that set of initial genom ...
written 5 days ago by Jennifer Hillman Jackson22k
0
votes
1
answer
31
views
1
answers
Answer: A: blastx evalue problem
... Hello, Reformat the value to be: `1e-05` Are you using Galaxy or running the tool command line or both? I see your other post at Biostars where the command-line was used: https://www.biostars.org/p/259182/ If you are having problems with the Galaxy version, please make sure that the most current ...
written 5 days ago by Jennifer Hillman Jackson22k
1
vote
1
answer
36
views
1
answers
Comment: C: Please recalibrate my memory of the account
... Update: I just checked your account and there are two active histories with a combined data total that is over the 250 GB allocation. (117.5 GB + 133.1 GB = 250.6 GB). Do you need more space for an active research project? If so, please send us an email at galaxy-bugs@lists.galaxyproject.org from yo ...
written 5 days ago by Jennifer Hillman Jackson22k
0
votes
1
answer
36
views
1
answers
Answer: A: Please recalibrate my memory of the account
... Hello, Please try these solutions to start with: https://biostar.usegalaxy.org/p/23625/#23630 If you still have trouble after that, please let us know and we can help more. Thanks! Jen, Galaxy team ...
written 5 days ago by Jennifer Hillman Jackson22k

Latest awards to Jennifer Hillman Jackson

Popular Question 2 days ago, created a question with more than 1,000 views. For Text Editing
Scholar 11 days ago, created an answer that has been accepted. For A: How get Cancer WGS for analysis in Galaxy
Scholar 14 days ago, created an answer that has been accepted. For A: 'Sampling' Bam or BigWig files?
Scholar 24 days ago, created an answer that has been accepted. For A: Aligning more than 2 sequences
Scholar 24 days ago, created an answer that has been accepted. For A: Trinity- error setting metadata
Scholar 25 days ago, created an answer that has been accepted. For A: Help with intersect -BedTools, WindowBed
Scholar 4 weeks ago, created an answer that has been accepted. For A: Trinity unusual error
Scholar 5 weeks ago, created an answer that has been accepted. For A: filter by fasta ids
Scholar 5 weeks ago, created an answer that has been accepted. For A: Extract Genomic DNA error with custom genome
Popular Question 5 weeks ago, created a question with more than 1,000 views. For Get Galaxy! Your own Local Server
Popular Question 6 weeks ago, created a question with more than 1,000 views. For About Galaxy !
Scholar 8 weeks ago, created an answer that has been accepted. For A: bowtie2 out of memory
Teacher 8 weeks ago, created an answer with at least 3 up-votes. For A: bowtie2 out of memory
Scholar 10 weeks ago, created an answer that has been accepted. For C: Error using DataManager to fetch a reference genome
Scholar 12 weeks ago, created an answer that has been accepted. For A: Each sample as a condition? - cuffdiff
Scholar 3 months ago, created an answer that has been accepted. For A: Can I get back "Operate on Genomic Interval" on local Galaxy instance?
Scholar 3 months ago, created an answer that has been accepted. For A: DEPRECATED tools in Galaxy
Scholar 3 months ago, created an answer that has been accepted. For C: AddOrReplaceReadGroups Fatal error
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: bowtie2 out of memory
Scholar 4 months ago, created an answer that has been accepted. For A: Upload to the Galaxy ftp server
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: HISAT2 - no reference genome available
Scholar 4 months ago, created an answer that has been accepted. For A: Help with intersect -BedTools, WindowBed
Scholar 4 months ago, created an answer that has been accepted. For A: Extract Genomic DNA error with custom genome
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: HISAT2 - no reference genome available
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: HISAT2 - no reference genome available

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 89 users visited in the last hour