Admin: Jennifer Hillman Jackson

Reputation:
23,140
Status:
Trusted
Location:
United States
Website:
https://www.linkedin.c...
Last seen:
46 minutes ago
Joined:
7 years, 5 months ago
Email:
j**@galaxyproject.org

Jennifer Hillman-Jackson

Galaxy Application Support
http://usegalaxy.org
http://galaxyproject.org
http://biostar.usegalaxy.org

Posts by Jennifer Hillman Jackson

<prev • 5,690 results • page 1 of 569 • next >
0
votes
1
answer
129
views
1
answers
Answer: A: Data manager failure to create index(s) in 17.05 local
... Hello, Around the time this question was asked, certain data managers had a problem with dependency installation. Specifically, before running the indexes for a tool suite, that tool suite needed to be installed first. That problem has since been resolved. The other tool issues were also likely re ...
written 46 minutes ago by Jennifer Hillman Jackson23k
0
votes
1
answer
106
views
1
answers
Answer: A: FASTA consensus from BWA-MEM mapped MinION data?
... Hello, Once the data is in `fastqsanger` format, or in a mapped `BAM` dataset, the data can be used with Galaxy's tool/workflows. Related question: https://biostar.usegalaxy.org/p/22618/ Galaxy Tutorials: https://galaxyproject.org/learn/ Thanks! Jen, Galaxy team ...
written 1 hour ago by Jennifer Hillman Jackson23k
0
votes
1
answer
190
views
1
answers
Answer: A: Galaxy cummeRbund fails to identify sample name for X and Y axis for scatter and
... Hello, This tool is problematic right now. The issues involve graphing in general and any query that filters by gene id. Please follow this ticket for updates: https://github.com/galaxyproject/tools-devteam/issues/340 Thanks! Jen, Galaxy team ...
written 1 hour ago by Jennifer Hillman Jackson23k
0
votes
1
answer
119
views
1
answers
Answer: A: Impossibility to make POST calls from a Galaxy server to a Jetty server for an e
... Resolved at IRC #galaxyproject aka https://gitter.im/galaxyproject/Lobby Issues was a problematic proxy server config. ...
written 2 hours ago by Jennifer Hillman Jackson23k
0
votes
1
answer
90
views
1
answers
Comment: C: the galaxy FTP serve keeps asking me for user name and password
... FAQ: https://galaxyproject.org/ftp-upload/ Note that the server name should be entered as `usegalaxy.org` without the leading `ftp://`. ...
written 2 hours ago by Jennifer Hillman Jackson23k
0
votes
1
answer
102
views
1
answers
Answer: A: VCF break create multi tool
... Hello, Try the tool **VCFselectsamples**. The tool **VCFbreakCreateMulti** performs a different function. Thanks, Jen, Galaxy team ...
written 2 hours ago by Jennifer Hillman Jackson23k
0
votes
1
answer
126
views
1
answers
Answer: A: BAM files on IGV look empty
... Hello, Closing this out under the assumption that this is now working. Please let us know if you need more help. Thanks, Jen, Galaxy team ...
written 2 hours ago by Jennifer Hillman Jackson23k
0
votes
1
answer
47
views
1
answers
Answer: A: plotProfile/plotHeatmap - How to change the file names?
... Hello, Yes, these are in the same order as originally entered on the tool form. You can click on the "i" View Details for the job to access this ordering. Some discussion around improving how the data could be named more informatively is tracked in this ticket for a future tool update: https://gi ...
written 2 hours ago by Jennifer Hillman Jackson23k
0
votes
1
answer
41
views
1
answers
Answer: C: debug warnings from delayed job(s) bloating log file
... Reference: issue discussion at https://gitter.im/galaxyproject/Lobby aka #galaxyproject IRC: https://botbot.me/freenode/galaxyproject/2017-10-24/ ...
written 2 hours ago by Jennifer Hillman Jackson23k
0
votes
1
answer
24
views
1
answers
Answer: A: How many should multiple alignment of tophat-out in Human RNA-seqs?
... Hello, The multiple alignment rate seems high. But, this could be how you set up the job parameters with Tophat/Tophat2 (I'm not sure which are you using, and that may not matter going forward). **Tophat/Tophat2 have been deprecated. Please use HISAT2 instead**. To retain more or fewer alignments ...
written 5 hours ago by Jennifer Hillman Jackson23k

Latest awards to Jennifer Hillman Jackson

Scholar 22 hours ago, created an answer that has been accepted. For A: Reference genome download - a step-by-step please?
Scholar 13 days ago, created an answer that has been accepted. For A: CummerRbund sqlite input file doesnt correspond to Cuffdiff output
Teacher 14 days ago, created an answer with at least 3 up-votes. For A: bowtie2 out of memory
Scholar 14 days ago, created an answer that has been accepted. For A: FASTA QC ON GROOMER DATA :
Scholar 15 days ago, created an answer that has been accepted. For A: Trinity- error setting metadata
Popular Question 20 days ago, created a question with more than 1,000 views. For Getting Started with Galaxy Biostar
Popular Question 22 days ago, created a question with more than 1,000 views. For February 18, 2011 Galaxy Development News Brief
Teacher 26 days ago, created an answer with at least 3 up-votes. For A: bowtie2 out of memory
Scholar 26 days ago, created an answer that has been accepted. For A: Trinity- error setting metadata
Scholar 5 weeks ago, created an answer that has been accepted. For A: Retrieve Taxonomic Information
Popular Question 5 weeks ago, created a question with more than 1,000 views. For Fasta Format, Custom Genomes, and GATK Chromosome ordering
Popular Question 5 weeks ago, created a question with more than 1,000 views. For April 8, 2011 Galaxy Development News Brief
Popular Question 7 weeks ago, created a question with more than 1,000 views. For Get Galaxy! Your own Local Server
Scholar 8 weeks ago, created an answer that has been accepted. For A: how to Installing Tools into Galaxy from Tool Shed
Scholar 3 months ago, created an answer that has been accepted. For A: Extract Genomic DNA error with custom genome
Scholar 4 months ago, created an answer that has been accepted. For A: Illumina DNA sequence upload problem
Popular Question 5 months ago, created a question with more than 1,000 views. For Welcome to Galaxy Biostar
Scholar 5 months ago, created an answer that has been accepted. For A: filter by fasta ids
Scholar 5 months ago, created an answer that has been accepted. For A: CuffDiff Replicates - which files do replicates 0, 1, 2 point to?
Scholar 5 months ago, created an answer that has been accepted. For A: Illumina DNA sequence upload problem
Popular Question 5 months ago, created a question with more than 1,000 views. For April 8, 2011 Galaxy Development News Brief
Popular Question 5 months ago, created a question with more than 1,000 views. For Text Editing
Scholar 5 months ago, created an answer that has been accepted. For A: How get Cancer WGS for analysis in Galaxy
Scholar 6 months ago, created an answer that has been accepted. For A: 'Sampling' Bam or BigWig files?
Scholar 6 months ago, created an answer that has been accepted. For A: Aligning more than 2 sequences

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 83 users visited in the last hour