Admin: Jennifer Hillman Jackson

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Last seen:
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Joined:
7 years, 11 months ago
Email:
j**@galaxyproject.org

Jennifer Hillman-Jackson

Galaxy Application Support
http://usegalaxy.org
http://galaxyproject.org
http://biostar.usegalaxy.org

Posts by Jennifer Hillman Jackson

<prev • 6,379 results • page 1 of 638 • next >
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Answer: A: Analysis SNP table
... Hello, Please see the variant analysis tutorials here: https://galaxyproject.org/learn/ Thanks, Jen, Galaxy team ...
written 2 days ago by Jennifer Hillman Jackson25k
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Comment: C: Unable to select GTF file from history in featureCounts (Galaxy version 1.6.0.3)
... This is a good idea. We've been discussing something very similar at Gitter (along with better help for the built-in annotation). The tool is going to be updated again -- and this could be added, too. You can make a proposed change yourself with a Pull Request against the tool repository here: https ...
written 2 days ago by Jennifer Hillman Jackson25k
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Comment: C: Trim Galore run time issue
... Hello ilia.belotserkovsky! Questions similar to yours can already be found at: Job execution delays at Galaxy Main https://usegalaxy.org We have closed your question to allow us to keep similar content in the same thread. If you disagree with this please tell us why in a reply ...
written 2 days ago by Jennifer Hillman Jackson25k
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Comment: C: jobs gray for too long
... Hello jenyka_dm! Questions similar to yours can already be found at: Job execution delays at Galaxy Main https://usegalaxy.org We have closed your question to allow us to keep similar content in the same thread. If you disagree with this please tell us why in a reply below. We' ...
written 2 days ago by Jennifer Hillman Jackson25k
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Answer: A: Server queue problem
... Hello, The queue has been very busy at Galaxy Main https://usegalaxy.org and should clear up soon. Leave your queued jobs queued and they will process. Avoid deleting/restarting, as this places the new jobs back at the end of the queue, extending wait time. Thanks! Jen, Galaxy team ...
written 2 days ago by Jennifer Hillman Jackson25k
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Answer: A: CuffDiff not working with CXB files
... Hello, The developers are still looking at the problem and we consider this a priority fix. I created a ticket specifically for this problem (using a simpler tool, but one that presents with the same behavior), please follow for updates: https://github.com/galaxyproject/usegalaxy-playbook/issues/12 ...
written 3 days ago by Jennifer Hillman Jackson25k
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Comment: C: FreeBayes doesn't use workflow variable
... I haven't tested this function with Freebayes specifically for some time. Doing so now. More feedback soon. Jen, Galaxy team ...
written 3 days ago by Jennifer Hillman Jackson25k
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Answer: A: Extract aligned exactly 1 time fron Bowtie2?
... Hello, This forum is focused on Galaxy usage, so I'll give you two way to do this. **Line command help** for a similar query is posted at Biostars (general): - https://www.biostars.org/p/95929/ **To do the same filtering in Galaxy**, use one of these tools: - NGS: SAMtools > Filter SAM on ...
written 3 days ago by Jennifer Hillman Jackson25k
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Answer: A: problems with installing a tool from Galaxy tool shed
... Hello, I found this prior Q&A that sounds like it might be your problem as well: https://biostar.usegalaxy.org/p/8548/ I am not sure how the other user was able to access the admin tools if not actually an admin in the configuration files, but when they cleared that up and importantly, **resta ...
written 3 days ago by Jennifer Hillman Jackson25k
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Comment: C: problems with installing a tool from Galaxy tool shed
... Which version of Trinity are you installing? Please reference by the Tool Shed's repository link and confirm you are targetting the latest version. https://usegalaxy.org/toolshed ...
written 3 days ago by Jennifer Hillman Jackson25k

Latest awards to Jennifer Hillman Jackson

Scholar 5 days ago, created an answer that has been accepted. For A: Star-Fusion last-matching gene pairs file
Scholar 12 days ago, created an answer that has been accepted. For A: Upload to the Galaxy ftp server
Scholar 17 days ago, created an answer that has been accepted. For A: How to know if mapping to reference genome was succesful?
Scholar 18 days ago, created an answer that has been accepted. For A: Trinity- error setting metadata
Scholar 26 days ago, created an answer that has been accepted. For A: Need help with "Reorder SAM/BAM" tool
Popular Question 4 weeks ago, created a question with more than 1,000 views. For Re: Mitochondrial Transcripts
Scholar 4 weeks ago, created an answer that has been accepted. For C: Error using DataManager to fetch a reference genome
Scholar 4 weeks ago, created an answer that has been accepted. For A: Star-Fusion last-matching gene pairs file
Scholar 5 weeks ago, created an answer that has been accepted. For A: How to delete workflow from list of published workflows
Popular Question 5 weeks ago, created a question with more than 1,000 views. For Load Data From Galaxy To Igv
Scholar 5 weeks ago, created an answer that has been accepted. For A: Error in Galaxy - ''Fatal error: The HTSeq python package is not properly instal
Great Question 5 weeks ago, created a question with more than 5,000 views. For Get Galaxy! Your own Local Server
Teacher 7 weeks ago, created an answer with at least 3 up-votes. For A: Mapping paired reads to reference genome, variant calling
Scholar 7 weeks ago, created an answer that has been accepted. For A: Jobs starting to run and then stopping
Teacher 7 weeks ago, created an answer with at least 3 up-votes. For A: bowtie2 out of memory
Scholar 8 weeks ago, created an answer that has been accepted. For A: How to know if mapping to reference genome was succesful?
Scholar 9 weeks ago, created an answer that has been accepted. For A: 'Hidden' Galaxy features which are really useful /
Scholar 9 weeks ago, created an answer that has been accepted. For A: How get Cancer WGS for analysis in Galaxy
Scholar 9 weeks ago, created an answer that has been accepted. For A: Need help with "Filter pileup" tool: not recognizing pileup data in "Select Data
Scholar 10 weeks ago, created an answer that has been accepted. For A: Illumina DNA sequence upload problem
Scholar 10 weeks ago, created an answer that has been accepted. For A: Uploading NCBI Genome
Scholar 10 weeks ago, created an answer that has been accepted. For A: Qiime file not found error
Scholar 10 weeks ago, created an answer that has been accepted. For A: Qiime file not found error
Great Question 11 weeks ago, created a question with more than 5,000 views. For Welcome to Galaxy Biostar
Cylon 11 weeks ago, received 1,000 up votes.

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