User: cmarcho

gravatar for cmarcho
cmarcho10
Reputation:
10
Status:
New User
Location:
Greece
Last seen:
3 days, 9 hours ago
Joined:
3 years, 5 months ago
Email:
c******@mcb.umass.edu

Posts by cmarcho

<prev • 5 results • page 1 of 1 • next >
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Comment: C: Jobs starting to run and then stopping
... Thanks for your reply, these are some of the bigger files that I have tried to run so that makes sense. I wasn't aware of the wall-time/resubmission thing, so thanks for that information! ...
written 2.5 years ago by cmarcho10
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Comment: C: Jobs starting to run and then stopping
... Everything only gets reverted once that I can tell, so it should be the case that you described below. ...
written 2.5 years ago by cmarcho10
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Comment: C: Jobs starting to run and then stopping
... Just a note, a job that was running just reverted back to "waiting" status.  ...
written 2.5 years ago by cmarcho10
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Jobs starting to run and then stopping
... Hi, Recently I have been using Galaxy to run Cufflinks but I have been having problems where a job will sit waiting to run for a long time (over 12 hours), then will go yellow and start to run, and then go grey and stop running. When it stops running, it ends up sitting for days. I have tried resta ...
speed cufflinks galaxy rna-seq written 2.5 years ago by cmarcho10 • updated 2.5 years ago by Jennifer Hillman Jackson23k
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Trouble with samtools mpileup when I supply my own reference genome
... I've been working on Galaxy to run samtools mpileup function. When I use the supplied reference genome (in my case, mouse mm10), everything runs smoothly and the output bcf works great from my downstream applications. However, when I try to run the mpileup with a reference genome I provide, I get a ...
samtools mpileup rna-seq written 3.4 years ago by cmarcho10 • updated 3.4 years ago by Jennifer Hillman Jackson23k

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Popular Question 2.4 years ago, created a question with more than 1,000 views. For Trouble with samtools mpileup when I supply my own reference genome

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