User: mariano.avino

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European Union
Last seen:
2 years, 8 months ago
Joined:
3 years, 5 months ago
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m************@na.icar.cnr.it

Posts by mariano.avino

<prev • 13 results • page 1 of 2 • next >
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file ARFF not recognized in my history
... Hi there, I am trying to upload an ARFF file to https://galaxy.cbio.mskcc.org to use the SVM Toolbox,'Train and Test SVMs' tool. Once the file is uploaded it is then not recognized in this tool when I choose the option file ARFF. It tells me no ARFF dataset available when I do have it in my histor ...
public-servers datatype galaxy upload written 2.7 years ago by mariano.avino0 • updated 2.7 years ago by Jennifer Hillman Jackson23k
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Depth of Coverage
... I am noticing that DP of those sites that will become eventually later variant calls are very much reduced after certain steps of my workflow (between SAM-to-BAM file and MarkDups file for example) and this is evident also from the fact that the file is reduced from 1.5 Giga becomes 195 mega. I was ...
snp written 3.2 years ago by mariano.avino0 • updated 3.2 years ago by Jennifer Hillman Jackson23k
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Comment: C: Failure to upload file
... I tried to do it with other browsers like Firefox and I get the message that the connection has been lost...this has been happening since Sunday morning (in Europe). Thanks ...
written 3.2 years ago by mariano.avino0
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(Closed) Failure to upload file
... I uploaded a file via FTP to galaxy. Now I would like to put it on my library. I see the file when I open get data and upload file. I check it, then I select the reference genome and I press execute but nothing happens. The upload does not start. Could you help me please? ...
galaxy written 3.2 years ago by mariano.avino0 • updated 3.2 years ago by Daniel Blankenberg ♦♦ 1.7k
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Comment: C: Need help with "ANNOVAR Annotate VCF" tool
... Thank you for your answer, and regarding to that earlier post you sent me I had already aligned my file with hg19 however I had done all my analysis on my GATK shell which I installed on my machine, then I upload my vcf file on Galaxy just to run the ANNOVAR. Then I got the problem. ...
written 3.3 years ago by mariano.avino0
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Need help with "ANNOVAR Annotate VCF" tool
... Hi there, When I open Annovar annotate VCF tool on Galaxy I cannot visualize any option for the boxes Gene Annotations, Annotation Regions, and Annotation Databases. There is nothing for me to select, could you tell me how I can get some of those? Thanks a lot, Mariano   Tool name: ANNOVAR Ann ...
annovar-annotate-vcf database vcf metadata genome written 3.3 years ago by mariano.avino0 • updated 3.3 years ago by Jennifer Hillman Jackson23k
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Answer: A: Using memory 75%
... I have solved the problem sending an email to galaxy-bugs@bx,psu.edu, this is their answer: "In your account, under histories, go to "Saved Histories", select "Advanced Search", and look at your deleted histories". I did this and I effectively saw there were some undeleted permanently files. Tha ...
written 3.3 years ago by mariano.avino0
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Answer: A: Using memory 75%
... Thanks again, Yes I have permanently canceled my histories as well and nothing had changed, I still have the problem... I guess I will contact the email you provided me. Thanks again, Mariano ...
written 3.3 years ago by mariano.avino0
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Answer: A: Using memory 75%
... Thank you for your answer, I have already done everything you are saying but nothing worked, I still have lots of memory occupied and that means I have to stop making analysis given that I got an error for the insufficient space. Can you please solve this problem? Thank you very much again, My r ...
written 3.3 years ago by mariano.avino0
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Using memory 75%
... Hi there, Why do I still have 75% of my memory occupied when I discarded all my histories and data? Thanks a lot, Regards, Mariano ...
memory written 3.3 years ago by mariano.avino0

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