User: wukai199010

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Posts by wukai199010

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Comment: C: The cpu using question when I run the cufflinks.
... Ok, thanks! ...
written 3.3 years ago by wukai1990100
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Comment: C: The cpu using question when I run the cufflinks.
... Hi, Thanks! I running the program on my local clusters' one node directly, and I don't using the "qsub". Blastx is running by others in my institute. So, why he can get the more computing resource? Best, Kai Wu ...
written 3.3 years ago by wukai1990100
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Comment: C: Why cufflinks v1&v2 "-p 4" parameter just using 100% cpu on my local host?
... Ok, thanks! ...
written 3.3 years ago by wukai1990100
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Comment: C: The cpu using question when I run the cufflinks.
... Thanks for your answer. I running the program on my local cluster's one node. So, it's the program's problem? ...
written 3.3 years ago by wukai1990100
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Why cufflinks v1&v2 "-p 4" parameter just using 100% cpu on my local host?
... Hi, When I using cufflinks version 1 and version 2 on my local host, I use the parameters of "-p 4", just like below, but it always just use the 1 cpu. My host is : HOSTNAME                ARCH         NCPU  LOAD  MEMTOT  MEMUSE  SWAPTO  SWAPUS ----------------------------------------------------- ...
cufflinks written 3.3 years ago by wukai1990100
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The cpu using question when I run the cufflinks.
...   My question is, my "cufflinks" using the 100% cpu before the others run the "blastx", but now, the "cufflinks" just using 6.7% cpu, and the others using the 90% cpu, why? It's not not fair. ...
cufflinks written 3.3 years ago by wukai1990100 • updated 3.3 years ago by Bjoern Gruening4.8k
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Answer: A: Tophat2 align_summary interpretation
... When I run my RNA-Seq data, it have  high multiple alignments like "of these:  28066482 (93.3%) have multiple alignments (15218075 have >20)". So what's the  mean for that? And, it "59.6% concordant pair alignment rate".   ...
written 3.4 years ago by wukai1990100

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