User: prashanth.klancy

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Posts by prashanth.klancy

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Answer: A: Bowtie2 not working
... Thank you very much Galaxy Team ...
written 4.0 years ago by prashanth.klancy0
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Is this correct way ??
... Dear Sir, while doing RNA-Seq analysis, after mapping, i have downloaded mouse reference gene set (.gtf format) and did cufflinks analysis to track out FPKM values of the genes. When i did it, i got all the FPKM values '0'. After that, i have edited the reference gene set (.gtf) like this.. 1. fir ...
genomes cufflinks gtf identifiers rna-seq written 4.0 years ago by prashanth.klancy0 • updated 4.0 years ago by Jennifer Hillman Jackson25k
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Bowtie2 not working
... Dear sir, i have uploaded some RNA Seq data and done with FastQc. I wanted to map the reads to mouse reference genome mm10 in bowtie2. I have been trying since two days, but its showing that the job is waiting to run. I have used bowtie2 in galaxy previously but never had this problem. Please let m ...
datasets rna-seq bowtie status waitingtorun written 4.0 years ago by prashanth.klancy0

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