User: htreves

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htreves0
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European Union
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3 years, 5 months ago
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Posts by htreves

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Answer: A: How to map RNA-seq reads to an annotated reference genome in GFF format
... Hey again,   Now it seems to work! Thank you! :) Going over the data, I can see the reads mapped to a location in the reference sequence (fasta format), but cannot tell how it corresponds to the annotated genes, since I could only use fasta format file as the reference (and not an annotation file ...
written 3.5 years ago by htreves0
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Answer: A: How to map RNA-seq reads to an annotated reference genome in GFF format
... Thanks, It was very helpful and now I got all the output files from Tophat. Now, even after creating a New track browser in the visualization menu, and using my genome as reference genome, when trying to add datasets of these output files, they are not recognized and the browser shows that there ar ...
written 3.5 years ago by htreves0
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How to map RNA-seq reads to an annotated reference genome in GFF format
... Hi, I am trying to map RNA-seq reads to a GFF annotation file I created using tophat2 through Galaxy. When trying to select a reference genome from my history files, no file is identified as an option. I've uploaded a GFF3 file. the same thing happened even when I've uploaded a GTF file from the "R ...
rna-seq galaxy tophat gff written 3.5 years ago by htreves0

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