User: bwb012

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bwb01220
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New User
Location:
United States
Last seen:
4 years, 3 months ago
Joined:
4 years, 4 months ago
Email:
b*****@bucknell.edu

Posts by bwb012

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Comment: C: Help with downloading files from EBI SRA
... These are the two specific files I have been working with: DRX013093: 454 GS Junior paired end sequencing; Transcriptome analysis of uninfected 3rd instar larvae of D. melanogaster. DRX013094: 454 GS Junior paired end sequencing; Transcriptome analysis of Penicillium-fungus infected 3rd instar lar ...
written 4.2 years ago by bwb01220
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Cufflinks error when trying to align against genome
... I am working with tophat2 and cufflinks in order to try to align RNA-seq reads against an assembled genome. The reads I am using are for uninfected and infected Drosophila melanogaster larvae. I executed tophat2 on both files of reads, and then downloaded the assembled annotated transcript for chrom ...
cufflinks rna-seq error assembly written 4.2 years ago by bwb01220 • updated 4.2 years ago by Jennifer Hillman Jackson25k
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Help with downloading files from EBI SRA
... I am new to galaxy and have been trying to figure out how to align RNA-seq reads to a genome in order to observe differential gene expression. I have been messing around with Drosophila melanogaster experimental reads from the EBI SRA site.  Most experiments are labeled as paired-end reads, however ...
paired-end ebi sra download rna-seq written 4.3 years ago by bwb01220
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Help with interpreting RNA-seq output
... I am new to galaxy and have been trying to figure out how to align RNA-seq reads to a genome in order to observe differential gene expression. I have been messing around with Drosophila melanogaster experimental reads from the EBI SRA site. Side Question: Most experiments are labeled as paired-end ...
bowtie2 cufflinks rna tophat2 sequencing written 4.3 years ago by bwb01220 • updated 4.3 years ago by tom.bair10

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