User: edoade_2014

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edoade_201430
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Location:
European Union
Last seen:
3 years, 5 months ago
Joined:
3 years, 6 months ago
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e**********@libero.it

Posts by edoade_2014

<prev • 4 results • page 1 of 1 • next >
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Answer: A: How to get all possible group pairings in cuffdiff- Main
... Hi, Sorry I just realised all pairwise comparisons are all kept in the same file.  Thanks ...
written 3.5 years ago by edoade_201430
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How to get all possible group pairings in cuffdiff- Main
... Hi, I have 4 samples and followed the tophat, cufflinks, cuffmerge and cuffdiff workflow.  I merged the assembled transcripts (cufflinks) of all samples in cuffmerge and imported the merged gtf in cuffdiff flagging the 4 different conditions each with replicates. The analysis has been done in Main, ...
cuffdiff rna-seq written 3.5 years ago by edoade_201430
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Comment: C: De novo transcriptome assembly and reference guided transcriptome assembly
... Dear Jen, Thank you for your kind and exhaustive response. I still have one question, I have the gene set annotations (ggf or gtf) and the predicted transcript sequences (.fa). The Tophat2 application on Galaxy allows me only to use .fa files under the "Select reference genome" pop up menu. Would I ...
written 3.5 years ago by edoade_201430
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De novo transcriptome assembly and reference guided transcriptome assembly
... Hi, I have four related questions about de novo RNAseq data analysis. I have 4 RNAseq data obtained from 4 closely related insect species, for each data I have 3 biological replicates. I have the genome sequence (chromosome sequences) for only one of these species, while I have the gene set annotat ...
rna-seq cufflinks tophat assembly written 3.5 years ago by edoade_201430 • updated 3.5 years ago by Jennifer Hillman Jackson23k

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