User: athonysmith

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Posts by athonysmith

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Comment: C: Need help with "Stitch MAF blocks" tool
... When input .GTF, 'Stich MAF blocks'(SMB) will report 'exon' as block. When input .bed, SMB will report 'transcript' as block. I wrongly mix them up. @Jen, many thanks! ...
written 3.8 years ago by athonysmith0
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Comment: C: Need help with "Stitch MAF blocks" tool
... I think it may be a bug in 'sticth MAF blocks'. I guess it could be the large number of blocks which cause the stitching step does not happen. What we get is the extracted segments un-stitched. In my dataset history, the 56th step using the dataset of 54th step. When I reduce the stitching block n ...
written 3.8 years ago by athonysmith0
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Need help with "Stitch MAF blocks" tool
... The "stitch-maf-blocks" report that I get 763,251 sequences. After I download the result, the number of the sequences is actually 988,610 sequences. This number is equal to the every segments in the exon not the number of lines of bed file. I have used this tools for several times. This situation i ...
stitch-maf-blocks written 3.8 years ago by athonysmith0 • updated 3.8 years ago by Jennifer Hillman Jackson25k
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Comment: C: usage of history
... The galaxy system send me an error like "<galaxystar+78115f14+code@biostars.io>: Command died with status 127: " curl -F key='galaxy5364' -F body='<-' https://biostar.usegalaxy.org/local/email/ | /export/test.py". Command output: sh: 1: /export/test.py: not found" So I wrongly send again. ...
written 3.8 years ago by athonysmith0
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Comment: C: usage of history
... Thanks, it really helps! Best, Zeng 2014-08-21 localemail 发件人:"Jennifer Hillman Jackson on Galaxy Biostar" <notifications@biostars.org> 发送时间:2014-08-20 14:31 主题:[galaxy-biostar] A: usage of history 收件人:"athonysmith"<athonysmith@gmail.com> 抄送: Activity on a post you are following on Galax ...
written 3.8 years ago by athonysmith0
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usage of history
... After I have removed almost all results, the usage of space will not drop. Is it not a usage of disk space?   ...
dataset galaxy history disk space history delete written 3.8 years ago by athonysmith0 • updated 3.8 years ago by Jennifer Hillman Jackson25k

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