User: dgygax

gravatar for dgygax
dgygax50
Reputation:
50
Status:
Trusted
Location:
United States
Last seen:
1 year, 8 months ago
Joined:
4 years, 1 month ago
Email:
d*****@insilico.us.com

Posts by dgygax

<prev • 13 results • page 1 of 2 • next >
0
votes
3
answers
807
views
3
answers
Answer: A: History accessible by many users
... Thank you, all the information has been very helpful. For now we will have all the lab members share a single account, and as you advise we will be careful monitoring the data and ensuring that only one user is logged on at a time. Thanks again for all the help. ...
written 3.9 years ago by dgygax50
1
vote
3
answers
807
views
3
answers
History accessible by many users
... Hi, I am an admin for a local instance of galaxy. The local instance of galaxy is on a server that many different lab members all have access to. Is it possible to make a group for the lab members/users so that they will all have access to the same group of histories. Here is an example: There ar ...
permissions publishing sharing history histories written 3.9 years ago by dgygax50 • updated 3.9 years ago by Jennifer Hillman Jackson25k
0
votes
2
answers
981
views
2
answers
Comment: C: Retrieve Current History Name in XML as variable
... Thanks, I just voted. I believe this feature would be very helpful for some tools. ...
written 3.9 years ago by dgygax50
0
votes
2
answers
981
views
2
answers
Comment: C: Retrieve Current History Name in XML as variable
... Thanks, I will look at the tool. ...
written 3.9 years ago by dgygax50
2
votes
2
answers
981
views
2
answers
Retrieve Current History Name in XML as variable
... Hi, Is there any way to retrieve the current history name in the XML file of a tool in galaxy. Within the tools folder I have a XML file that calls a python script to write reports. This tool writes a series of reports for each sample in a specified Set. Right now I specify the Set using the follow ...
xml tool galaxy written 3.9 years ago by dgygax50 • updated 3.9 years ago by jmchilton1.1k
1
vote
1
answer
1.2k
views
1
answers
Comment: C: Trouble galaxy API set_as_current
... We are using galaxy to automate a workflow for lab technicians. Each time they run the workflow for a given batch we want a separate history for that batch. Rather than relying on the technician to create a history we want galaxy to automatically create a history each time the workflow is run and sw ...
written 4.0 years ago by dgygax50
7
votes
1
answer
1.2k
views
1
answer
Trouble galaxy API set_as_current
... I am trying to change the current working history using the API. In order to do so I have imported the python module requests. The python code I am running is:   import requests requests.put('http://localhost:8080/api/histories/e144222fed44799a/set_as_current?key=ee91bee815264e77d38e16dd5ed2e5c9' ...
galaxy history api written 4.0 years ago by dgygax50 • updated 4.0 years ago by Martin Čech ♦♦ 4.7k
1
vote
1
answer
1.2k
views
1
answer
Change current history in galaxy using API or BioBlend
... Hi, I am currently writing a galaxy tool that creates a new history and then carries out further analysis. I would like this new history to become the current history on the web interface and the output from the tool to be submitted to this new history. Is there a way to do this using the API and p ...
galaxy history api bioblend written 4.0 years ago by dgygax50 • updated 4.0 years ago by Martin Čech ♦♦ 4.7k
0
votes
1
answer
1.9k
views
1
answers
Comment: C: Upload directory paths
... This tool would be used lab wide, but would not become public. I have gone around it and am just hardcoding the beginning of the path in my python program. The user will only be inputting the assay number(same as folder label) they want to examine and then everything else is happening under the hood ...
written 4.1 years ago by dgygax50
0
votes
1
answer
1.9k
views
1
answers
Comment: C: Upload directory paths
... I am sorry, I am very new to galaxy. Are you saying the solution was already specified above?  I have a biological assay that produces one folder that contains two separate directories on my local hard drive. Each of these directories contains 200 files. One directory holds tiff files and the other ...
written 4.1 years ago by dgygax50

Latest awards to dgygax

Popular Question 3.8 years ago, created a question with more than 1,000 views. For Upload directory paths

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 96 users visited in the last hour