User: fat9

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fat90
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3 years, 11 months ago
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f***@case.edu

Posts by fat9

<prev • 6 results • page 1 of 1 • next >
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Comment: A: Viewing BIGWIG files in UCSC
... It is working now! Thank you so much! ...
written 3.7 years ago by fat90
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Comment: A: Viewing BIGWIG files in UCSC
... Hi thanks Nate. The link still doesn't appear for me on usegalaxy.org. My bigwig files are SacCer3 for yeast.  All Best, Frank ...
written 3.7 years ago by fat90
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Viewing BIGWIG files in UCSC
... Hello, Previously I have been able to view BigWig files by clicking on the job, and selecting Display in UCSC view. As of today I only have the option to view in IGB. I am not sure why this is and would appreciate help in getting my BigWig files to be viewed in the UCSC Genome Browser. Thank you.  ...
bigwig ucsc written 3.7 years ago by fat90 • updated 2.8 years ago by trinna220
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Comment: A: Collapsing and Mapping Reads
... Thank you for responding to my question, much appreciated. I'm not actually doing RNA-seq but HITS-CLIP instead, but there was no tag for that so I thought RNA-seq might be sufficient. Do you still think that Tophat/Tophat2 would be a better fit for sequencing? (since we must do PCR to generate our ...
written 3.9 years ago by fat90
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Collapsing and Mapping Reads
... Hello, I'm starting with FASTQ files and want to Collapse the sequences and then Map them to the Saccer3 (yeast) genome using bowtie. The problem is that if I Collapse the reads first they are in a FASTA format and they need to be FASTQ in order to use Bowtie to map them. Can someone help me with ...
galaxy bowtie written 3.9 years ago by fat90
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Comment: C: Job is waiting to run.
... Hi Jen, I am actually having the exact same issue at usegalaxy.org.  I have been trying to run bowtie jobs but they are been grey 'waiting to run' for almost 24 hours now. I have not stopped or re-submitted them at all, as to not disrupt my place in the queue. These are my only jobs in my history w ...
written 4.0 years ago by fat90

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