User: christopher.paran

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Posts by christopher.paran

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Different results with manual MACS tool vs. workflow automated MACS tool for ChIP analysis
... hi, i wanted to post about something i found out today working with the MACS tool (under NGS: peak calling) for ChIP analysis. i found that the MACS tool will run with the 'use fixed background lambda as local lambda for every peak region'  box invisibly checked when used as part of an automated wo ...
chip-seq macs lambda workflow written 3.0 years ago by christopher.paran0 • updated 3.0 years ago by Dannon Baker3.6k
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Answer: A: slurmstepd error job exceeded memory limit (8034000 > 7864320) being killed
... i re-ran as well and it did work, i was able to complete the entire workflow in the 101 tutorial as well. thanks very much all for the help! chris ...
written 3.1 years ago by christopher.paran0
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Answer: A: slurmstepd error job exceeded memory limit (8034000 > 7864320) being killed
... Hi, thanks very much for the responses, I understand the resource allocation now. I believe I did use the appropriate datasets, Feb 2009 Human genome Build and Repeats, and tool, Operate on genomic intervals - Join, as described in the tutorial, so I've gone ahead and used the bug report button in t ...
written 3.1 years ago by christopher.paran0
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slurmstepd error job exceeded memory limit (8034000 > 7864320) being killed
... hi, I'm posting this question because i didn't see a previous post about it (slurmstepd error, seen on thursday oct 30 @ 6 PM)   i ran a job using the galaxy browser interface following the Galaxy 101 tutorial. this particular workflow included importing 1) all exons [~610,000 regions in bed forma ...
galaxy software error written 3.1 years ago by christopher.paran0

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