User: pande

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pande110
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110
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New User
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Last seen:
7 years, 5 months ago
Joined:
8 years, 6 months ago
Email:
p****@uni-muenster.de

Posts by pande

<prev • 11 results • page 1 of 2 • next >
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Extraction Of Intervals
... Dear Galaxy, I have two ChIP reads and want to extract the regions in between them . For example chr1:66585377-66585400 and chr1:66585616-66585639 and now I would like to extract the region beginning from 665855401 up to 66585615. Can I get help from Galaxy tools. regards, Amit ...
galaxy written 7.4 years ago by pande110 • updated 7.4 years ago by vasu punj360
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Help Regarding Annotation
... Dear galaxy, Conceptually if I take sequences from mm9 and use the lift over to convert them to mm8 and then annotate these with any software for cis element annotation do you think I will get a fairly good result ? I am bit confused. Does the annotation for the cis regulome undergo so much variati ...
galaxy written 7.8 years ago by pande110 • updated 7.8 years ago by Maximilian Haussler30
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Maf Alignments
... Hi Galaxy, Can you please enlighten me on the concept of MAF alignments ? Are they the same as BLASTZ searches ???? Thanks . Amit. ...
galaxy written 7.8 years ago by pande110 • updated 7.8 years ago by Bob Harris190
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Problems Accessing The Sequences Through Genome Browser
... Dear Galaxy, I have some genomic intervals for the human genome and want to extract the same for the mouse.So, I used the MAF pairwise alignment tool. But, interestingly, the associated sequences are not to be found at all through the genome browser, for file that galaxy generat ...
galaxy written 7.9 years ago by pande110 • updated 7.9 years ago by Jennifer Hillman Jackson25k
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Problems Accessing The Sequences Through Genome Browser
... Dear Galaxy, I have some genomic intervals for the human genome and want to extract the same for the mouse.So, I used the MAF pairwise alignment tool. But, interestingly, the associated sequences are not to be found at all through the genome browser, for file that galaxy genera ...
galaxy written 7.9 years ago by pande110 • updated 7.9 years ago by Daniel Blankenberg ♦♦ 1.7k
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Problems With Galaxy
... Hi, I uploaded two files since morning today and the message that is being displayed is "tool is waiting to run" Can someone please let me know the reason. thanks. ...
written 8.1 years ago by pande110 • updated 8.1 years ago by Jennifer Hillman Jackson25k
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Removing Repeated Entries From Chip Regions
... Hi, Can galaxy help in removing the entries like this and convert these into one region like 149116122-149116142: chr1 149116122 149116141 region_27 0 + chr1 149116123 149116142 region_28 0 + chr1 149116124 149116141 region_29 0 + chr1 1491161 ...
galaxy written 8.1 years ago by pande110 • updated 8.1 years ago by Anton Nekrutenko1.7k
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Problems With Galaxy Kindly Reply Urgently
... Dear Galaxy, We have installed Galaxy on one of our Institute's server http://totoro:8080/ but the problem is when ever some file is uploaded for example in the bed format to retrieve sequences from fetch sequences tool the message that gets displayed is :" ...
galaxy written 8.3 years ago by pande110
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Problems With Galaxy Kindly Reply Urgently
... Dear Galaxy, We have installed Galaxy on one of our Institute's server http://totoro:8080/ but the problem is when ever some file is uploaded for example in the bed format to retrieve sequences from fetch sequences tool the message that gets displayed is ...
galaxy written 8.3 years ago by pande110
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Installing Galaxy
... Dear Galaxy, If I download galaxy on the server of my Institute , will I be in a position to extract the sequences of my interest ? and use the tools as I would do them on your server....I have the ENCODE data and it is difficult t ...
galaxy written 8.3 years ago by pande110 • updated 7.6 years ago by Jordi Rambla20

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