User: mychung

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mychung0
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Taiwan
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1 day, 8 hours ago
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3 years, 8 months ago
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m******@ym.edu.tw

Posts by mychung

<prev • 8 results • page 1 of 1 • next >
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Comment: C: BWA-MEM Fatal error: Matched on ERROR
... Hi, Jen Thank you very much for the support and suggestions. It's good to know that the BAM files are intact. As suggested, a BAM file was sorted before performing MarkDuplicatesWithMateCigar. Unfortunately, it failed again. The error message is as the following, [bam_header_read] EOF marker is ...
written 1 day ago by mychung0
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BWA-MEM Fatal error: Matched on ERROR
... Hi, I was aligning with bwa-mem on a 52.7GB trimmed paired fastq from WGS under the following conditions Will you select a reference genome from your history or use a built-in index? cached Using reference genome hg19 Single or Paired-end reads paired_iv Select fastq dataset 1: F30_S11_L001_ ...
alignment software error written 5 days ago by mychung0 • updated 2 days ago by Jennifer Hillman Jackson23k
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Comment: C: Can we map fastq files with paired ends using bwa mem on galaxy?
... Select "paired interleaved" under "single or paired-end reads" will do. ...
written 11 days ago by mychung0
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Comment: C: Can we map fastq files with paired ends using bwa mem on galaxy?
... If read1 and read2 are in seperate fastq, then we specify each in the pair selection. For a fastq file contain both read1 and read2, how should the two reads be specified in the pair selection? Select the same fastq in both? Thank you! ...
written 11 days ago by mychung0
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Can we map fastq files with paired ends using bwa mem on galaxy?
... I have a collection of timmed fastq files from WES, each contain paired ends. Is it possible to map these files using bwa mem on galaxy? ...
alignment written 12 days ago by mychung0 • updated 11 days ago by Devon Ryan1.9k
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Comment: C: uploaded FASTQ not showning in the pulldown menu
... Hi Jennifer and Bjoern, Thank you both for help. It worked after converting by "fastq groomer". ...
written 3.7 years ago by mychung0
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Comment: C: uploaded FASTQ not showning in the pulldown menu
... Hi Jennifer and Bjoern, Thank you both for help. It worked after converting by "fastq groomer". ...
written 3.7 years ago by mychung0
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uploaded FASTQ not showning in the pulldown menu
... Hi,   I FTPed .fastq.gz files to Galaxy server and uploaded to Galaxy (appear in the history menu). But when analyze data using "Mapping with Bowtie for Illumina", the files are not showning up in the pulldown menu for "FASTQ file". Thank you for help.   Maggie ...
alignment written 3.7 years ago by mychung0 • updated 3.7 years ago by Jennifer Hillman Jackson23k

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Popular Question 3.6 years ago, created a question with more than 1,000 views. For uploaded FASTQ not showning in the pulldown menu

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