User: Hotz, Hans-Rudolf

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Posts by Hotz, Hans-Rudolf

<prev • 283 results • page 1 of 29 • next >
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Comment: C: Local instance upgrade caused error: need to upgrade database from 132 to 134
... Hi Deane Have a look at the file "version.py" which is lists the version number. Go into the galaxy root directory, and execute: "cat lib/galaxy/version.py" Hope this helps Regards, Hans-Rudolf ...
written 13 days ago by Hotz, Hans-Rudolf1.6k
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Answer: A: RNA-SEQ analysis tutorial
... Hi Aun Have a look here: https://galaxyproject.github.io/training-material/topics/usegalaxy/tutorials/rb-rnaseq/tutorial.html Regards, Hans-Rudolf ...
written 8 weeks ago by Hotz, Hans-Rudolf1.6k
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Answer: C: Galaxy + Postgres backup script ?
... wrt clean up scripts: https://galaxyproject.org/admin/config/performance/purge-histories-and-datasets/ Regards, Hans-Rudolf ...
written 8 weeks ago by Hotz, Hans-Rudolf1.6k
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Comment: C: Admin panel does not show up on interface
... you can ignore this warning Nevertheless, I am still convinced you are looking at two different galaxy servers: the one you access in your web browser, and the one you try to add your e-mail address as admin. What happens, if you change the port in the 'galaxy.ini' file: - change "#port = 8080" t ...
written 9 weeks ago by Hotz, Hans-Rudolf1.6k
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Comment: C: Admin panel does not show up on interface
... Well, this is a strong hint, that you are editing the wrong 'galaxy.ini' file or that (for whatever reason) this 'galaxy.ini' file is not read by the server. Have you tried Jennifer's suggestion of starting over with a fresh checkout? Hans-Rudolf ...
written 9 weeks ago by Hotz, Hans-Rudolf1.6k
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Comment: C: Admin panel does not show up on interface
... Hi Katharina Sometimes, when I work with several galaxy servers running out of different directories, I modify the wrong 'galaxy.ini' file. A quick test, to double check whether you are modify the right file: - change "#brand = None" to "brand = Test" - restart your server, check the website: d ...
written 9 weeks ago by Hotz, Hans-Rudolf1.6k
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Answer: A: A minimal galaxy server needed
... Hi Have a look at: https://galaxyproject.org/choices/ You might also want to read this: https://galaxyproject.org/admin/ten-simple-steps-galaxy-as-a-service/ Hope this helps Regards, Hans ...
written 10 weeks ago by Hotz, Hans-Rudolf1.6k
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Comment: C: How to manually delete a galaxy user?
... I don't know, why you want to 're-use' the same email address....but if you really have to, I would just change the entry in the 'email' column (e.g. change 'foo@bar.ciom' to '_foo_@bar.com') in the galaxy_user table. But be very careful if you manually interact with the database and do this only as ...
written 12 weeks ago by Hotz, Hans-Rudolf1.6k
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Answer: A: How do I save multi-line 'area' text input to a file in tool XML?
... Hi Special characters are sanitized for security purposes. See: ~/lib/galaxy/util/__init__.py for all the mapped characters. Have a look at: https://docs.galaxyproject.org/en/latest/dev/schema.html#tool-inputs-param-sanitizer for ways to handle this on a per tool basis. However, keep in mind, t ...
written 3 months ago by Hotz, Hans-Rudolf1.6k
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Answer: A: Error unavailable variable in Galaxy
... Hi I don't think it is a Galaxy issue. The problem more likely lies in the R script: you don't pass the command line arguments to the script. Have a look at this simple example: https://www.r-bloggers.com/passing-arguments-to-an-r-script-from-command-lines/ Also, the end of your script will prob ...
written 3 months ago by Hotz, Hans-Rudolf1.6k

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