User: Hotz, Hans-Rudolf

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Posts by Hotz, Hans-Rudolf

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Comment: C: sam to bam - Galaxy version 17.01
... ...but is it in your path? Have a look at this similar (?) case: https://biostar.usegalaxy.org/p/19938/ ...
written 3 days ago by Hotz, Hans-Rudolf1.5k
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Comment: C: sam to bam - Galaxy version 17.01
... just double checking: is samtools installed? sometimes 'samtools' need to be even in the path. Regards, Hans-Rudolf ...
written 4 days ago by Hotz, Hans-Rudolf1.5k
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Comment: C: LDAP/AD auth_conf.xml setting
... Hi Le-Shin Setting the correct options in the auth_conf.xml file is difficult, and the options depend on the settings of your local ldap server. What kind of error do you get in the galaxy log file? Hans-Rudolf ...
written 4 days ago by Hotz, Hans-Rudolf1.5k
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Comment: C: LDAP/AD auth_conf.xml setting
... Hi leshin I am not an apache expert, but I guess all the authentication is no longer required in the apache config file, once you have switch to doing the authentication within galaxy based on the settings in the auth_conf.xml file. So I would go step by step. First try to get the authentication w ...
written 5 days ago by Hotz, Hans-Rudolf1.5k
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Answer: A: Upgrade Galaxy to new release
... Hi Maki There is no "step by step" guide, since there is just one (or two) step: git checkout release_17.01 && git pull --ff-only origin release_17.01 and restarting the server. (see also: https://galaxyproject.org/admin/get-galaxy/#updating-exiting ) You don't need to worry about y ...
written 10 days ago by Hotz, Hans-Rudolf1.5k
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Answer: A: Hardware sizing question
... You need to consider: - how many user will run jobs on your galaxy server - how often will they run jobs - what kind of jobs - what kind of data and source of data, e.g.: bacterial genomes / mammalian genomes and keep in mind: The Galaxy server itself doesn't need many resources. The tools you ...
written 17 days ago by Hotz, Hans-Rudolf1.5k
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Answer: A: Galaxy software Download
... go to: https://galaxyproject.org/ and follow the "Get Galaxy" link which is under the "Deploy and Develop" tap Hans-Rudolf ...
written 19 days ago by Hotz, Hans-Rudolf1.5k
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Comment: C: GFF / Fasta into Trackster
... ...and in your case, you probably need to add "CONVERTER_gff_to_fli_0" I hope this fixes your problem as well. Regards, Hans-Rudolf ...
written 4 weeks ago by Hotz, Hans-Rudolf1.5k
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Comment: C: GFF / Fasta into Trackster
... well, it looks like, I have just been running into a similar issue as part of upgrading to release v17.01 see: http://dev.list.galaxyproject.org/Convert-BED-to-Feature-Location-Index-breaks-when-preserve-python-environment-legacy-only-tp4670669.html ...
written 4 weeks ago by Hotz, Hans-Rudolf1.5k
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Comment: C: GFF / Fasta into Trackster
... wrt the gff file: does it work with another (eg smaller, simpler) gff file? Regards, Hans-Rudolf ...
written 5 weeks ago by Hotz, Hans-Rudolf1.5k

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