User: plindenbaum

gravatar for plindenbaum
plindenbaum90
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France
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http://plindenbaum.blo...
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yokofakun
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Last seen:
10 months, 1 week ago
Joined:
3 years, 7 months ago
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p**********@yahoo.fr

Posts by plindenbaum

<prev • 20 results • page 1 of 2 • next >
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Comment: C: Running tests for my tools.xml
... thank you Youri for this long answer ! I'll try this tomorrow morning ! ...
written 13 months ago by plindenbaum90
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Running tests for my tools.xml
... It's not clear to me how I can run the `` for the tools.xml I've created. My tools require an environment variable set in galaxy's: config/local_env.sh Running `planemo test` (takes a long time to start ('migrating...' ) ...) and fails because the $variable is not available. How can I run ...
tests written 13 months ago by plindenbaum90 • updated 13 months ago by y.hoogstrate450
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Answer: A: Tool.xml : correct way to define an environment_variable ?
... the question was answered on http://dev.list.galaxyproject.org/Tool-xml-correct-way-to-define-an-environment-variable-td4670165.html ...
written 13 months ago by plindenbaum90
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Tool.xml : correct way to define an environment_variable ?
... I'm trying to create some `tools.xml` that use java. Those tools need to download some library (*.jar) files from http://central.maven.org/ and I want to create a variable $MYTOOLCLASSPATH containing the jars. I've tried the following xml : wget -P "$REPOSITORY_INSTA ...
xml tool_dependency environment_variable tool written 13 months ago by plindenbaum90 • updated 13 months ago by Bjoern Gruening4.8k
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Comment: C: tool.xml : current working directory ?
... ... need a coffee... of course it works... Excuse me, I'm a java newbie :-s ...
written 14 months ago by plindenbaum90
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[closed] tool.xml : current working directory ?
... I want to use the current working directory as the tmp directory in a java tool. java -Dtmp.io.dir=${DIR??} -jar mytool.jar ... Is there a predefined environment variable for this directory ? ...
xml tool written 14 months ago by plindenbaum90
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Comment: C: tool.xml : multiple but optional data
... It worked. Thanks ! :-) ...
written 14 months ago by plindenbaum90
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Comment: C: tool.xml : multiple but optional data
... Thank you John , I'll have a look at this on monday morning ! ...
written 14 months ago by plindenbaum90
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Comment: C: tool.xml : multiple but optional data
... Note: the `` xml and the cheetah code are in fact inserted with a macro.xml. ...
written 14 months ago by plindenbaum90
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tool.xml : multiple but optional data
... Hi all, I'm trying to wrap a tool where there is an **optional+multiple** param declared as: (...) #if $input_intervals : #for $idx, $rgn in enumerate( $input_intervals ): -B "${rgn}" #end for #end if (...) (...) (...) I lea ...
wrapper xml param tool written 14 months ago by plindenbaum90 • updated 14 months ago by jmchilton1.0k

Latest awards to plindenbaum

Student 3.4 years ago, asked a question with at least 3 up-votes. For How can I get the version of a running instance of galaxy ?
Popular Question 3.4 years ago, created a question with more than 1,000 views. For Adding custom tools: newbie
Popular Question 3.4 years ago, created a question with more than 1,000 views. For Adding custom tools: resolving (external ) XML entities

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