User: vanam

gravatar for vanam
vanam30
Reputation:
30
Status:
New User
Location:
United States
Last seen:
1 month ago
Joined:
4 years, 1 month ago
Email:
v****@wustl.edu

Posts by vanam

<prev • 16 results • page 1 of 2 • next >
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Comment: C: MPileup SNP and indel caller (Galalxy Version 0.0.1) error
... Thanks very much, Jennifer. ...
written 4 weeks ago by vanam30
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Comment: C: MPileup SNP and indel caller (Galalxy Version 0.0.1) error
... Hi Nate, I'm trying to move to the newer versions, but when I use the same data with MPileup 2.0 on Main a line is generated in the resulting vcf for every base, with as the ALT, resulting in over a million lines (MPileup 0.0.1 used to call about 450 variants on this targeted sequencing data). For ...
written 5 weeks ago by vanam30
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Comment: C: MPileup SNP and indel caller (Galalxy Version 0.0.1) error
... Thank you very much for looking into this, Nate! -Marcy ...
written 3 months ago by vanam30
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Answer: A: MPileup SNP and indel caller (Galalxy Version 0.0.1) error
... Hi Nate, I haven't tried the newest versions. I need to rerun an old pipeline. Will it be possible to fix the older MPileup version or do I need to move to the newer versions? Thanks, Marcy ...
written 3 months ago by vanam30
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MPileup SNP and indel caller (Galalxy Version 0.0.1) error
... Hi, I'm trying to rerun an MPileup job I successfully ran before, using MPileup SNP and indel caller (Galaxy Version 0.0.1). I'm using the 'Run this job again' icon (the icon with two arrows that make a circle), and am not changing any of the settings or the input file. The job is now failing with t ...
samtools mpileup software error written 3 months ago by vanam30
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Comment: C: VCF-VCFintersect error - invalid literal for int() with base 10: 'false'
... Hi Jen, I sent in the bug report. Thanks, Marcy ...
written 21 months ago by vanam30
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Comment: C: VCF-VCFintersect error - invalid literal for int() with base 10: 'false'
... Hi Jen, Thanks for the reply. I don’t think there is anything wrong with the inputs. I’ve used these exact vcf files with this exact tool before on Main and the job ran successfully. The vcf files have not been altered since the last time I ran the job. I’m not using any advanced options. Thanks so ...
written 21 months ago by vanam30
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VCF-VCFintersect error - invalid literal for int() with base 10: 'false'
... Hi, I'm trying to run a VCF-VCFintersect job I've run before and the job is failing with this error: invalid literal for int() with base 10: 'false'. I'm using vcf files that I've used before with this job. Is it possible there is something wrong with the tool? I'm using Main. Thanks, Marcy ...
mismatch input reference-genome identifier written 21 months ago by vanam30 • updated 21 months ago by Jennifer Hillman Jackson25k
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Comment: C: "NGS: Picard (beta) Mark Duplicate reads" missing at Main
... Great. Thanks! Marcy ...
written 2.4 years ago by vanam30
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Answer: A: "NGS: Picard (beta) Mark Duplicate reads" missing at Main
... Thanks so much Martin. Is it possible to get a direct link to "NGS: Picard (beta) Add or Replace Groups" as well? ...
written 2.4 years ago by vanam30

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