User: d92b41001

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d92b410010
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2 years, 6 months ago
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d********@ntu.edu.tw

Posts by d92b41001

<prev • 4 results • page 1 of 1 • next >
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Error of wig/BedGraph-to-bigWig converter
... Hi, I have a ChIP-Seq BAM file aligned on the chicken galGal3 reference genome using Bowtie2. I used “Create a BedGraph of genome coverage” under BEDTools to convert it into a bedgraph file. After that, the file was converted into a bigwig file using “Wig/BedGraph-to-bigWig converter” under “Conver ...
bam bigwig galaxy ucsc bedbraph written 3.0 years ago by d92b410010 • updated 3.0 years ago by Bjoern Gruening5.0k
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Comment: C: No chicken reference genome (galGal4) for Bowtie2 - map reads against reference
... Hi Jennifer, Thanks for your information. Only chicken galGal4 reference genome downloaded from UCSC is enough? Bowtie2 needs a bowtie2 index. Does Galaxy will perform it based on the custom reference genome? Thanks a lot. Gary ...
written 3.0 years ago by d92b410010
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No chicken reference genome (galGal4) for Bowtie2 - map reads against reference genome
... Hi, I cannot find the chicken (galGal4) reference genome when I run Bowtie2 - map reads against reference genome under NGS: Mapping. Could Galaxy add galGal4 Bowtie 2 inddex? Many thanks. Gary ...
chip-seq bowtie written 3.0 years ago by d92b410010 • updated 3.0 years ago by Jennifer Hillman Jackson25k
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Convert BAM into bigwig for chicken
... Hi, I used functions of “Create a BedGraph of genome coverage” and “Wig/BedGraph-to-bigWig” in Galaxy to convert a BAM file into a bigwig file. It worked well when BAM files were aligned onto a chicken galGal4 reference genome downloaded from the UCSC Genome Browser. However, it doesn’t work when t ...
bam bigwig written 3.6 years ago by d92b410010 • updated 3.6 years ago by Jennifer Hillman Jackson25k

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