User: GPS

gravatar for GPS
GPS20
Reputation:
20
Status:
New User
Location:
India
Last seen:
3 years, 6 months ago
Joined:
3 years, 7 months ago
Email:
G**************@gmail.com

Posts by GPS

<prev • 20 results • page 1 of 2 • next >
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Comment: C: Error when install tool from galaxy tool shed
... Hii Dave Thanks for reply me and its working and  install binaries in galaxy tool dependency directory path set in to universe_wsgi.ini file  (tool_dependency_dir = /home/data/galaxy-dist/tool_dependency_dir) but i want to pass this to my xml wrapper file so that it can be search SoftSearch.pl file ...
written 3.5 years ago by GPS20
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Error after upload bam file
... Hi All I am going to upload the bam file in galaxy by get-data -> upload file but i will get the error after upload file Error: Traceback (most recent call last): File "/home/plus91/galaxy-dist/lib/galaxy/jobs/runners/local.py", line 118, in queue_job job_wrapper.finish( stdout, stderr, ...
bam galaxy written 3.5 years ago by GPS20
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Comment: C: Error when install tool from galaxy tool shed
... Hii all  Thanks for replying me. I successfully upload my tool into galaxy tools shed but after I install the tool from tool shed to local galaxy  instance it will display a message of successfully installed but cant execute the tool_dependency file store in tool dependency type repository the tool ...
written 3.5 years ago by GPS20
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Answer: A: Error when install tool from galaxy tool shed
... Hello Jennifer  Thanks for reply . I following all the link and read the documentation and as per documentation I upload my tool on galaxy test tool shed (https://testtoolshed.g2.bx.psu.edu/) but when I install  tool into local galaxy instance i will get the error on installation status . Monitor ...
written 3.5 years ago by GPS20
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Error when install tool from galaxy tool shed
... Hello Everyone I upload my softsearch tool in to galaxy tool shed for that I create two repositories first repository contain  the file tool_dependencies.xml, softsearch.xml and tool-data directory  tool_dependencies.xml file contains: <?xml version="1.0"?> <tool_dependency>     < ...
testtoolshed repository galaxy toolshed written 3.5 years ago by GPS20 • updated 3.5 years ago by Dave B.410
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Answer: A: Add tool into tool shed of galaxy
... Hello Dannon Thanks for the reply . I refer the link you are send but and  i upload my tool into tool shed but when i install my tool in other local galaxy system I get the problem of path because of the  Repository metadata is associated with this change set       Thank You GPS   ...
written 3.5 years ago by GPS20
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Comment: C: Error when execute archer tool inside galaxy
... Hello Jennifer Thank you for the reply . I download the archer tool then try to integrate that tool into galaxy before  integration  archer tool in galaxy I executing that tool on the command line and i got this error on command line as I post earlier .  and I also try by removing extra "/" slash ...
written 3.5 years ago by GPS20
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Comment: C: Error when execute archer tool inside galaxy
... Hello Jennifer, Thank you for your reply i solve the bwa_enz not found  error  but now i have some error has been occur   so please tell me how i solve that error.     [M::main_mem] read 2 sequences (300 bp) from /home/plus91/archer_1.0.0pre/bwa_enz/tests//test2.fastq... [main] Version: 0.7.5 ...
written 3.5 years ago by GPS20
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Tool: Add tool into tool shed of galaxy
... Hello Everyone I am integrate a softsearch tool in galaxy project and now i want to add my tool into galaxy tool shed so other user can install and access that tool via tool shed  please any one can tell me how I add my complete tool inside the tool shed and my complete tool size in about 250MB   ...
galaxy tool written 3.5 years ago by GPS20
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Error when execute archer tool inside galaxy
... Hello everyone  I am trying to integrate and execute the archer analysis pipeline tool into galaxy project for that I write the XML file and execute the archer but galaxy will show error please any one tell me solution on this error. <?xml version="1.0"?> <tool id="archerTool" name="arche ...
samtools galaxy bwa tool written 3.5 years ago by GPS20 • updated 3.5 years ago by Jennifer Hillman Jackson23k

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