User: kelseyca

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kelseyca0
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Posts by kelseyca

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Comment: C: VCF Combine, missing chromosomes?!
... Hi Jennifer, Thank you for your prompt and thorough response! I tried putting the VCFs into a data collection and running it that way but it failed again :( Do you have any other suggestions? I am stuck on how to merge these VCF files! Best, Kelsey ...
written 4 weeks ago by kelseyca0
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Comment: C: VCF combine only showing chromosome 1 in the output
... Hello, I am having the same problem as the original poster (VCF combine output only showing data up to chromosome 3), and trying this solution did not work. Were there any updates or conclusion to this issue? Best, Kelsey ...
written 4 weeks ago by kelseyca0
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VCF Combine, missing chromosomes?!
... Hello, The VCF file output from VCF Combine only has data up until Chromosome 3. I checked the vcf file output from all the other steps I ran up until VCF Combine and the full data (all the chromosomes) was there, so it seems like this tool in particular is eating my data. I tried to run VCFsort on ...
combine vcf galaxy variants written 4 weeks ago by kelseyca0 • updated 26 days ago by Jennifer Hillman Jackson25k
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Followed Exome-Seq tutorial, but Gemini Load not working
... Hello! I am performing a study with data from 80 cancer patients, half of which showed one symptom and the other half did not. This is my first time trying exome-seq to find variants. I followed [this exome sequencing data tutorial][1] and created a annotated, combined VCF file from all my samples ...
galaxy analysis usegalaxy.org variants exome-seq written 5 weeks ago by kelseyca0 • updated 5 weeks ago by Jennifer Hillman Jackson25k

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