User: flippy23

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flippy230
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Posts by flippy23

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Answer: A: RNA-star: splice junction
... Hello Thank you, that helps out a lot. I used the GTF version that was provided in the link to the right of all the files. Does this resolve those issues that you are talking about? This is what occurs at the top of the file: ##description: evidence-based annotation of the human genome (GRCh38), ...
written 15 days ago by flippy230
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Comment: C: RNA-star: splice junction
... Update: I used the "ALL" option in this database: https://www.gencodegenes.org/releases/current.html Would this be appropriate for whole blood RNA-seq? ...
written 15 days ago by flippy230
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RNA-star: splice junction
... Hello, I am new to RNA-seq data. I am using the built-in index and using the reference genome without a built-in gene model (hg38) to align in STAR. How do I find or construct the gene model file for splice junctions? Thanks ...
splice galaxy star rna-seq written 15 days ago by flippy230

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