User: johnathanwong4

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Posts by johnathanwong4

<prev • 6 results • page 1 of 1 • next >
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Obtaining names of dataset from paired dataset collection in the xml
... With single data and list collection, I can use element_identifier in the xml to obtain the name of the data such as "ABC_1.fastq.gz". However this is not the case with paired dataset or list of paired datasets. With the latter, if you were to simply attach ".element_identifier", the code would fail ...
wrapper written 17 days ago by johnathanwong410
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Comment: C: Extending workflow from single file input to collection input
... Thanks. This solution worked.in my scenario. ...
written 22 days ago by johnathanwong410
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Getting galaxy to install package specified in wrapper
... I'm writing a wrapper for a tool right now but I'm having trouble getting galaxy to install the package specified in the wrapper in order to test the wrapper. Using the example in https://docs.galaxyproject.org/en/latest/dev/schema.html#tool-requirements-requirement as my guideline, I have somethi ...
wrapper dev xml planemo written 24 days ago by johnathanwong410 • updated 24 days ago by Jennifer Hillman Jackson25k
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Comment: C: Workflow inserting input name to output file
... Thanks. The tools you mentioned didn't work for my specific case but I used them as inspiration to make a galaxy tool that fits my exact need. ...
written 25 days ago by johnathanwong410
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Extending workflow from single file input to collection input
... So I've made a work flow with various tools on the toolshed. These tools can only take in a single file as input. Is there a way to wrap my workflow such that it works for a collection of inputs? ...
galaxy nested-workflows sub-workflow workflow written 25 days ago by johnathanwong410 • updated 24 days ago by Jennifer Hillman Jackson25k
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Workflow inserting input name to output file
... I've looked through some of the answers but they are all about renaming the output file. I would like to use the variable to modify the output file. I have a workflow that takes in reads of a sample and produces a tab file as its final output. I would like to insert the name of the input at the ver ...
workflow written 7 weeks ago by johnathanwong410 • updated 7 weeks ago by Mo Heydarian830

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