User: Brad Langhorst

gravatar for Brad Langhorst
Reputation:
100
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Trusted
Location:
United States
Last seen:
3 months, 2 weeks ago
Joined:
3 years, 7 months ago
Email:
b***@langhorst.com

Posts by Brad Langhorst

<prev • 26 results • page 1 of 3 • next >
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Answer: A: Workflow variable rename not working
... This has been migrated to github...   ...
written 22 months ago by Brad Langhorst100
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Comment: C: What Are The Possible Computations And What Are The Commands For "Compute An Exp
... Hi Greg: Maybe this is out of date. Based on the following experiment, I think there must be some  limitations on which python expressions are supported.  e.g. when i attempt to calculate this value str(c2)[11] of a tabular field galaxy reports  Invalid expression So at least python's slice fea ...
written 2.7 years ago by Brad Langhorst100
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Controlling Data Library Disk Usage
... After carefully re-reading the disk quota documentation, I see that datasets in the Data Libraries are not counted in user disk quotas. I have a shared disk resource for our internal galaxy  users that cannot be increased in size and am getting close to the limit. Both history data sets and data i ...
quota local instance written 3.0 years ago by Brad Langhorst100 • updated 2.9 years ago by Martin Čech ♦♦ 4.2k
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Comment: C: How to Use new Data Library Beta tool
... Thanks for the quick reply! Maybe my troubles are due to me running the October galaxy-dist tag. I'll try again with the next release. ...
written 3.0 years ago by Brad Langhorst100
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Comment: C: How to add a new dbkey (publicbuilds, manual_builds, builds.txt, data manager)
... Thanks for the responses! I just tried the new data manager from the test toolshed... I think it's a bit buggy (or maybe I've done something wrong... ) Here's the traceback from the failed tool execution Traceback (most recent call last): File "/mnt/galaxy/data/galaxy/galaxy-toolshed-tools/test ...
written 3.1 years ago by Brad Langhorst100
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How to Use new Data Library Beta tool
... I see that the beta data library tool has gained some features recently. I tried to use the From User Diretory method, but did not see any directories listed. Importing from user directories does work for the traditional library tool. Where can I find some docs on this? Do I need to set up some o ...
galaxy data library written 3.1 years ago by Brad Langhorst100 • updated 3.0 years ago by Martin Čech ♦♦ 4.2k
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Comment: C: How to add a new dbkey (publicbuilds, manual_builds, builds.txt, data manager)
... Yep. But you have to specify a dbkey in the first dropdown, and I can't find e.g. glycine max in the big list. Did I miss something about how this works? ...
written 3.1 years ago by Brad Langhorst100
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How to add a new dbkey (publicbuilds, manual_builds, builds.txt, data manager)
... What is the current method I should be using to add builds to galaxy (galaxy dist from 10/6/2014). E.g. adding a genome from plants.ensemble.org? I read about plans to create db key from the data manager tools, but I can't find the relevant tool.   Do i need to make up a name, fetch the genome a ...
galaxy written 3.1 years ago by Brad Langhorst100 • updated 3.1 years ago by Bjoern Gruening4.8k
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Comment: C: how to set up ruby environment
... I'm wondering about how these packages are resolved. Are you using bundler to resolve the packages? Is there any support for Gemfile or .ruby_version in the tool directory? Maybe you can point me at the setup_ruby_environment action - i couldn't find it in your repo. Thanks! Brad     ...
written 3.5 years ago by Brad Langhorst100
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How to specify a date picker in the tool xml
... How can I specify that I want a date from users in the tool xml.  I did not find a date datatype... Right now i'm just using text fields and failing the tool if i can't parse the text, i think a date picker would be friendlier.   ...
tool written 3.5 years ago by Brad Langhorst100 • updated 3.5 years ago by Bjoern Gruening4.8k

Latest awards to Brad Langhorst

Popular Question 17 months ago, created a question with more than 1,000 views. For Should galaxy default to fastqsanger instead of fastq?
Popular Question 2.7 years ago, created a question with more than 1,000 views. For Should galaxy default to fastqsanger instead of fastq?
Teacher 3.6 years ago, created an answer with at least 3 up-votes. For A: Galaxy Tool Shed use when using nginx as an authentication proxy
Scholar 3.6 years ago, created an answer that has been accepted. For A: Galaxy Tool Shed use when using nginx as an authentication proxy

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