User: mbt

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mbt0
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m**@sickkids.ca

Posts by mbt

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edgeR Reading Error
... Hi Jennifer? Still having problems with edgeR. I was able to get DeSeq2 to work by using very simple names for factor name and levels. This does not work for edgeR. I still get the following error error An error occurred with this dataset: Fatal error: Exit code 1 () Error in `row.names<-.data.f ...
rna-seq written 12 hours ago by mbt0
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EdgeR DESeq2 errors
... Hi Finally at the point of doing some differential expression analysis I used HTseq2 to align my data to mm10. That was successful. I used the " Back to Unnamed history htseq-count on collection 316" file and the corresponding mate file i.e treated group. In both cases when I fed the data into DEse ...
edger deseq2 de rna-seq written 19 hours ago by mbt0 • updated 18 hours ago by Jennifer Hillman Jackson25k
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Rnastar judging successful result
... Howdy RNA seq files are quite large ca. 2 gbytes fastq compressed. Paired end. I’ve used rnastar. Tried to map to hg38 used whole used whole human genome annotation gtf file from ucsf genome browser. Average read size 124 bp, average fragment size 450 bp. For rnastar junction overlap used 111 bp. ...
rna-seq written 6 days ago by mbt0 • updated 6 days ago by Jennifer Hillman Jackson25k
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TopHat Align Summary - whats a good results
... Howdy, Just got the results back from top hap - looked at align summary Not sure how to read it Left reads: Input : 25951385 Mapped : 231015 ( 0.9% of input) of these: 114189 (49.4%) have multiple alignments (8625 have >20) Righ ...
hisat2 mapping tophat rna-seq written 7 days ago by mbt0 • updated 7 days ago by Jennifer Hillman Jackson25k
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Dataset Error An error occured while running the tool upload1.
... Hi, I was able to download my data into the history panel ~63 Gb 20 shown 63 hidden all files are highlighted in red with x mark. All have the following associated error Dataset Error An error occured while running the tool upload1. I'm not sure what the problem ... not enough space...fastq.gz. ...
galaxy ftp upload written 12 days ago by mbt0 • updated 12 days ago by Jennifer Hillman Jackson25k
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Does your uploaded data remain private? -- Using Galaxy for clinical or private patient data analysis
... Hi When I upload the data, does it remain secure? Do others in the community have access to it? Do the results remain private, or are they part of some database? Mike ...
galaxy data security privacy written 13 days ago by mbt0 • updated 13 days ago by Jennifer Hillman Jackson25k

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