User: othman.soufan

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Posts by othman.soufan

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Comment: C: Workflow Failure Issue with .dat Compressed Files on a Local Galaxy Instance
... Do you kindly have any update on this issue? ...
written 9 weeks ago by othman.soufan0
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Comment: C: Workflow Failure Issue with .dat Compressed Files on a Local Galaxy Instance
... Just in case, I have also replied back to the bug report email with the shared link of the designed workflow. ...
written 10 weeks ago by othman.soufan0
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Comment: C: Workflow Failure Issue with .dat Compressed Files on a Local Galaxy Instance
... Hi Jennifer, Thanks so much for your follow-ups and replies. As for the usegalaxy server, the input files indeed had fastq.gz. However, over the local instance where this was failing, the assigned data type was fastqsanger.gz When I build the collection, the .fastq extension is maintained in the l ...
written 10 weeks ago by othman.soufan0
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Comment: A: Workflow Failure Issue with .dat Compressed Files on a Local Galaxy Instance
... Hi Jennifer, Please see my responses below: - Which Galaxy release are you running? 18.05 is the most current and strongly recommended. **Using "ourip:8080/api/version", I get: version_major: "18.05" So, this is actually based on checking out the latest version of the galaxy server.** - ...
written 10 weeks ago by othman.soufan0
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Workflow Failure Issue with .dat Compressed Files on a Local Galaxy Instance
... Greetings, We have developed a workflow using a local galaxy server instance including the following steps: 1. Input dataset collection 2. Trim Galore (trimming) 3. Tophat (alignment) ... The workflow starts running fine and when step 2 finishes, the output files generated using Trim Galore ar ...

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