User: gb

gravatar for gb
gb60
Reputation:
60
Status:
Trusted
Location:
Last seen:
1 week, 2 days ago
Joined:
2 months, 2 weeks ago
Email:
m**************@gmail.com

Posts by gb

<prev • 13 results • page 1 of 2 • next >
0
votes
1
answer
89
views
1
answers
Comment: C: Error in docker when using smtp_server
... I will come back to this later if other people also run into this, got other things to work on so this needed to wait. ...
written 15 days ago by gb60
0
votes
1
answer
67
views
1
answers
Comment: C: Should static-map also be changed on an address other than the web server root?
... I never installed galaxy in combination with apache but if the manual says nothing about static-map you should not do anything with it. Do you have problems or errors? ...
written 16 days ago by gb60
0
votes
1
answer
67
views
1
answers
Answer: A: Should static-map also be changed on an address other than the web server root?
... Is it not that you need to change this: # proxy all requests not matching other locations to uWSGI ProxyPass / unix:///srv/galaxy/var/uwsgi.sock|uwsgi:// # or uWSGI on a TCP socket #ProxyPass / uwsgi://127.0.0.1:4001/ # serve framework static content RewriteEngine On Re ...
written 16 days ago by gb60
1
vote
1
answer
52
views
1
answers
Answer: C: How to identify sequence motifs in bad file
... Maybe this can help https://biostar.usegalaxy.org/p/19825/ ...
written 25 days ago by gb60
1
vote
1
answer
81
views
1
answers
Answer: C: how to identify the adapter sequence?
... You can not see that in fastQC.... You could check "Adapter Content" and look up the sequence after that. ...
written 25 days ago by gb60
0
votes
1
answer
89
views
1
answers
Comment: C: Error in docker when using smtp_server
... Thanks for the response, I will try to run galaxy outside docker to check if it is a docker or galaxy thing. Think it is better to rule that out first. ...
written 29 days ago by gb60
0
votes
1
answer
89
views
1
answer
Error in docker when using smtp_server
... I am running galaxy in docker which is working. But when I configure the smtp server it gives the following error: The -s/--socket option is missing and stdin is not a socket. As smtp_server I use `smtp.gmail.com:587` Is some one familiar with this error? And has it to do with docker or gal ...
docker smtp written 4 weeks ago by gb60 • updated 4 weeks ago by Jennifer Hillman Jackson25k
0
votes
1
answer
171
views
1
answers
Comment: C: FASTA sequences not blasting.
... I am not familiar with the public servers so I can not help you more. But you need to mention which galaxy server you are using. Also check the input, before you can blast against a reference you need to index the reference fasta file. So basicly you convert a fasta file to a blast database. EDIT ...
written 10 weeks ago by gb60
1
vote
1
answer
171
views
1
answers
Answer: C: FASTA sequences not blasting.
... Not sure what you mean but this is already wrong: > My FASTA sequences ( in tabular format) are not blasting Fasta is a certain format, first you have a line starting with ">" and a description and the next line is a sequence. https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=Bl ...
written 10 weeks ago by gb60
0
votes
1
answer
158
views
1
answers
Answer: C: Python outputs empty on history
... So you pass the variable $output1 from the xml file into your python script. The variable $output1 is basically just a path, a output location. So for example this: with open(filename, 'w') as f: f.write(content) The filename should be the $output1 value. ...
written 10 weeks ago by gb60

Latest awards to gb

Scholar 11 weeks ago, created an answer that has been accepted. For A: Can't import pandas with python script
Teacher 11 weeks ago, created an answer with at least 3 up-votes. For A: Can't import pandas with python script

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 89 users visited in the last hour