User: markus.wolfien

Reputation:
50
Status:
New User
Location:
Germany
Last seen:
2 years, 4 months ago
Joined:
3 years, 7 months ago
Email:
m*************@gmail.com

Posts by markus.wolfien

<prev • 6 results • page 1 of 1 • next >
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Answer: A: fastq with invalid ID
... Hey, I got the problem and, furthermore, have three different ways to replace the white spaces from fastq formats. If anybody is interested please let me know. thanks for help markus ...
written 2.4 years ago by markus.wolfien50
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fastq with invalid ID
... Hey all, I recently got a new set of fastq files, and I would like to process them as usual. But they are not recognized by any tool, wheather uploaded here as fastqsanger or directly in FastQC. Are the whitespaces within the IDs causing the problems? I tried to rename the ID's with the fastx_rena ...
software error written 2.4 years ago by markus.wolfien50
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Comment: C: fastq files are't recognized by tools
... Hi dtabed, Yes, I'm the author of the workflow. If it is possible please add me at sk.y.p.e (markus.w791) and we will find a solution for your problem. Best regards, mwolfien ...
written 3.0 years ago by markus.wolfien50
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Comment: A: fastq files are't recognized by tools
... Hey again, now it recognizes the data, but during the uplaod (upload as fastqsanger) the fastq file is a kind of malformed. The upload somehow changes the first line of the file and adds the name of the file in front of the first @. Therefore the tools generate an error. May changing the upload pro ...
written 3.6 years ago by markus.wolfien50
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Comment: A: fastq files are't recognized by tools
... Thanks a lot. I changed the datatype and now everything is fine. ...
written 3.6 years ago by markus.wolfien50
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fastq files are't recognized by tools
... Hey, I'm looking forward to do some NGS analysis and would like to use your provided NGS tools. I uploaded some of my .fastq files (standardized in illumina 1.9) as fastq format. But somehow the tools, e.g. FASTQGroomer, don't recognize the data not as FASTQ. Is this a problem of data preprocessing ...
rna-seq written 3.6 years ago by markus.wolfien50 • updated 3.0 years ago by dtabed0

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Popular Question 2.8 years ago, created a question with more than 1,000 views. For fastq files are't recognized by tools

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