User: j_pasook

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j_pasook40
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Posts by j_pasook

<prev • 8 results • page 1 of 1 • next >
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Comment: C: Green error report from usegalaxy.eu from InterProScan
... Dear Jennifer, Thank you for reporting this to galaxy Europe team. j_pasook ...
written 4 weeks ago by j_pasook40
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Green error report from usegalaxy.eu from InterProScan
... Hello, I've tried to run InterProScan on use galaxy Europe server. I've encountered with this message; Picked up _JAVA_OPTIONS: -Xmx4G -Xms1G 15/10/2018 16:35:07:895 Welcome to InterProScan-5-44.0 Exception in thread "main" org.springframework.beans.factory.BeanCreationException: Error creating be ...
interproscan usegalaxy.eu galaxy written 4 weeks ago by j_pasook40 • updated 4 weeks ago by Jennifer Hillman Jackson25k
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Comment: C: Blastx red error on usegalaxy.eu -- Memory failure, Job exceeds resources
... Hello Jennifer, Downsizing my samples didn't work. I even downsized into 2kb in size which has 3-4 transcripts in it. Thank you, j_pasook ...
written 12 weeks ago by j_pasook40
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Blastx red error on usegalaxy.eu -- Memory failure, Job exceeds resources
... Hello everyone, I ran Blastx on usegalaxy.eu server using my assembled Transcriptome against Nr database and I got this red error; Fatal error: Exit code 255 () Error memory mapping:/data/db/databases/blast/2018-01-22/nr/nr.21.psq openedFilesCount=101 threadID=0 Error: NCBI C++ Exception: T0 " ...
blast galaxy blastx downsample memory-failure written 12 weeks ago by j_pasook40 • updated 12 weeks ago by Jennifer Hillman Jackson25k
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InterProScan green error on use galaxy.eu
... Hi, I executed interproscan in usegalaxy.eu using assembled Transcriptome as input. It showed me green error like this; Picked up _JAVA_OPTIONS: -Xmx4G -Xms1G 21/08/2018 18:09:45:386 Welcome to InterProScan-5-44.0 Exception in thread "main" org.springframework.beans.factory.BeanCreationException: E ...
galaxy interpro written 12 weeks ago by j_pasook40 • updated 12 weeks ago by Jennifer Hillman Jackson25k
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Red error from RSEM Trinity -- Solution: input matched paired end reads
... Hi, I've constructed a trinity assembly using ~30M PE read. Then I was trying to estimate abundance using "Align reads and estimate abundance on a de novo assembly of RNA-Seq data" tool in usegalaxy Europe server. I performed this exact tool before using 1M PE read sample before, and it was perfect ...
rsem usegalaxy.eu galaxy rna-seq trinity written 3 months ago by j_pasook40 • updated 3 months ago by Jennifer Hillman Jackson25k
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Comment: C: Problem with Trinity (Beta) using Galaxy
... Thanks!! I will look forward to it. Hoping that it'll get fixed soon ...
written 3 months ago by j_pasook40
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Problem with Trinity/Unicycler at https://usegalaxy.org -- Unicycler fixed, Trinity OPEN, follow for updates
... Hi, I've tried to execute my work using Trinity (Beta) via Galaxy. Every time I execute it shows this error to me; Can't locate Sys/Hostname.pm: Permission denied at /opt/packages/trinity/2.2.0/PerlLib/HPC/FarmIt.pm line 13. BEGIN failed--compilation aborted at /opt/packages/trinity/2.2.0/PerlLi ...
usegalaxy.org assembly galaxy unicycler trinity written 3 months ago by j_pasook40 • updated 3 months ago by Jennifer Hillman Jackson25k

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