User: Ray_Enke

gravatar for Ray_Enke
Ray_Enke0
Reputation:
0
Status:
New User
Location:
USA/Harrisonburg, VA/James Madison University
Website:
http://www.jmu.edu/bio...
Twitter:
@Enke_Lab
Last seen:
3 months ago
Joined:
3 months, 4 weeks ago
Email:
r***********@gmail.com

Undergraduate/graduate teacher & researcher at James Madison University in Harrisonburg, VA. Investigating molecular biology of the retina. Advocate for course-based genomics research.

Posts by Ray_Enke

<prev • 4 results • page 1 of 1 • next >
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Issue visualizing RNA-seq HISAT outputs in UCSC Genome Browser
... Hello, I've used Galaxy to run HISAT alignments and Picard marked duplicates on my RNA-seq files. I usually visualize the .bam alignment outputs in the UCSC genome browser but option for viewing in UCSC is currently not available in my Galaxy history. IGV is currently the only option that I see. D ...
ucsc genome browser rna-seq hisat alignment written 3 months ago by Ray_Enke0 • updated 12 weeks ago by Jennifer Hillman Jackson25k
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Comment: C: Viewing BAM files on UCSC genome browser
... Hello, The UCSC genome browser option for my HISAT bam outputs are not available in my Galaxy history. Does anyone know when this will be restored? Thanks! ...
written 3 months ago by Ray_Enke0
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Reference transcriptomes for kallisto in Galaxy
... Hello, I'm interested in using the Kallisto quant and psudo tools in Galaxy to analyze human, mouse, and chicken RNA-seq data sets. There are however, no reference transcriptomes to choose from at the moment. Is there an ETA on having some stock built in refs to choose from? I'm most interested in ...
rna-seq galaxy kallisto written 3 months ago by Ray_Enke0 • updated 3 months ago by Jennifer Hillman Jackson25k
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Comment: C: galGal5 reference genome and indexes
... Hi Jen, I'm looking in to transitioning my undergrad course chicken RNA-seq data analysis to Galaxy, however we need to have the updated galGal5 2015 genome assembly to do this. Do you have a time frame for adding this particular assembly? Thanks! ...
written 3 months ago by Ray_Enke0

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Autobiographer 3 months ago, has more than 80 characters in the information field of the user's profile.

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