User: philippe.moncuquet

Reputation:
10
Status:
New User
Location:
Australia
Last seen:
2 years, 11 months ago
Joined:
3 years, 9 months ago
Email:
p*****************@csiro.au

Posts by philippe.moncuquet

<prev • 4 results • page 1 of 1 • next >
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Comment: C: Gatk2 Galaxy Wrapper Available, Testing And Help Needed
... I can't believe missed that. I owe a beer, are you coming to GCC2015, if so I will see you there. Do you have any workflows that you use to test the installation ? I am still having problem to make genome references available but everything else seems to be working fine. Thanks for all the help. ...
written 2.9 years ago by philippe.moncuquet10
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Comment: C: Gatk2 Galaxy Wrapper Available, Testing And Help Needed
... Hi Bjorn, Thanks for the help. I have installed version 2.8  galaxydev@galaxy-compute$ java -jar "$GATK2_PATH/GenomeAnalysisTK.jar" --version                                                        2.8-1-g932cd3a I still get the same error in Galaxy about deprecation ##### ERROR ---------------- ...
written 2.9 years ago by philippe.moncuquet10
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Answer: A: Gatk2 Galaxy Wrapper Available, Testing And Help Needed
... Hi Bjoern, I am trying to install GATK2 on my instance of Galaxy. I have installed binaries, then wrappers you developed. During first phase of testing, tools were complaining about JAVA_VAR_PATH being not properly set. I hard coded it in the .bashrc of my galaxyuser. I am not sure it is the best ...
written 2.9 years ago by philippe.moncuquet10
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multiple entries in tool panel
... Hi,   I have a tool installed via the toolshed that I would like to appear in 2 different section of my tool panel. The tool definition appears in the shed_tool_conf.xml file.    My understanding was that shed_tool_conf.xml and tool_conf.xml were merged in integrated_tool_panel.xml when starting ...
tool panel written 3.1 years ago by philippe.moncuquet10 • updated 3.1 years ago by Bjoern Gruening4.9k

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