User: batmaiden

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batmaiden0
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Posts by batmaiden

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(Closed) Basemean always multiples of 0.5 in deseq2 results
... Hi, I analyzing RNA-seq with two samples: control and treatment. I use the following sequence of software: sortmerna -> hisat2 -> DESeq2. This is my R code for DESeq2: library( "GenomicFeatures" ) hse <- makeTxDbFromGFF( "~/Homo_sapiens.GRCh38.92.gtf", format="gtf" ) trans < ...
results deseq2 rna-seq basemean written 5 weeks ago by batmaiden0
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Comment: A: help with start DESeq
... the question is solved ...
written 5 weeks ago by batmaiden0
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(Closed) help with start DESeq
... Hi, I want to analyze my RNA-seq data in DESeq2. I have the following code: library( "GenomicFeatures" ) hse <- makeTxDbFromGFF( "~/Homo_sapiens.GRCh38.92.gtf", format="gtf" ) exonsByGene <- exonsBy( hse, by="gene" ) fls <- list.files( "./", pattern="bam$", full=TRUE ) library( "Rsamto ...
deseq software error rna-seq written 5 weeks ago by batmaiden0

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