User: marvin.holz

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Posts by marvin.holz

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Cuffmerge files contain different number of lines depending on reference annotation file - why is that?
... Hey guys, maybe I got the purpose of using cuffmerge wrong, but I thought it creates a file including all transcripts that are present in a certain number of samples (e.g. my whole experiment). I get an output of 97,000 lines running cuffmerge without an annotation file. Using two different .gtf f ...
output annotation cuffmerge written 5 weeks ago by marvin.holz0
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Answer: A: Bias correction in cufflinks
... Hey sreerajthamban16, did you solve your problem? I´m working with human data though, but whenever I choose the locally fetched genome I get an error. ...
written 6 weeks ago by marvin.holz0
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Stop deleted jobs
... Hey guys, I couldn´t find any solution for my problem: I queued up several jobs in my history for 24 samples. I recognized that I used wrong settings. I deleted the jobs, then deleted them permanently. Since three days usegalaxy keeps running the old deleted jobs and doesn´t run the new ones I adde ...
job usegalaxy stop cancel running written 6 weeks ago by marvin.holz0
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FASTQC Overrepresented Sequences
... Hey all, after running Trimmomatic and clipping Illumina adapters, I always run a FASTQC to have a look at the quality of my data. This time I received for 80 % of my samples the info that there are overrepresented sequences. I blasted them, they are no adapters but pre-40s rRNA and mitochondria ...
overrepresented sequences fastqc galaxy written 8 weeks ago by marvin.holz0 • updated 8 weeks ago by Jennifer Hillman Jackson25k
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useGALAXY - no space left on device
... Hey guys, this topic was addressed several times and I followed the instructions online. I deleted, deleted permanently and purged the histories. Upon doing so my available disk space went up from 30 to 200 Gb. But once I start running new jobs they stop with the error ´no space left on device´. I ...
galaxy written 10 weeks ago by marvin.holz0 • updated 10 weeks ago by Martin Čech ♦♦ 4.8k

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